Wall clock time and date at job start Mon Mar 30 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 C 1.50702 * 109.47161 * 120.00802 * 2 1 3 5 5 H 1.08000 * 120.00264 * 119.99850 * 4 2 1 6 6 C 1.37880 * 119.99616 * 299.99590 * 4 2 1 7 7 N 1.31516 * 119.99977 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99718 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47082 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46747 * 120.00275 * 8 6 4 11 11 H 1.48501 * 109.46942 * 239.99658 * 8 6 4 12 12 C 1.50709 * 109.47110 * 240.00275 * 2 1 3 13 13 C 1.35001 * 125.68374 * 325.00393 * 12 2 1 14 14 N 1.36845 * 107.09418 * 179.97438 * 13 12 2 15 15 C 1.36453 * 132.73695 * 179.97438 * 14 13 12 16 16 C 1.35575 * 119.07617 * 180.02562 * 15 14 13 17 17 C 1.40204 * 119.32769 * 0.02562 * 16 15 14 18 18 N 1.31223 * 120.37836 * 359.97438 * 17 16 15 19 19 C 1.34092 * 120.91782 * 0.02562 * 18 17 16 20 20 N 1.32520 * 131.94095 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46996 * 299.99765 * 1 2 3 23 23 H 1.08997 * 109.47539 * 59.99450 * 1 2 3 24 24 H 0.97001 * 119.99387 * 180.02562 * 7 6 4 25 25 H 1.08000 * 126.45135 * 0.02562 * 13 12 2 26 26 H 1.08008 * 120.45806 * 0.27860 * 15 14 13 27 27 H 1.08000 * 120.33488 * 179.97438 * 16 15 14 28 28 H 1.07997 * 119.80735 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.1483 -2.2860 3.6035 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5869 4.8164 12 6 2.0323 -0.7104 -1.2306 13 6 1.4479 -1.7759 -1.8185 14 7 2.2169 -2.1107 -2.8998 15 6 2.1103 -3.0897 -3.8443 16 6 3.0512 -3.1720 -4.8170 17 6 4.1089 -2.2517 -4.8289 18 7 4.1879 -1.3196 -3.9086 19 6 3.2644 -1.2268 -2.9409 20 7 3.1299 -0.3899 -1.9222 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.7096 1.1615 3.4845 25 1 0.5433 -2.2704 -1.4965 26 1 1.2857 -3.7868 -3.8197 27 1 2.9870 -3.9391 -5.5745 28 1 4.8628 -2.3103 -5.5999 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261180627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:07 Heat of formation + Delta-G solvation = 81.540408 kcal Electronic energy + Delta-G solvation = -13876.095875 eV Core-core repulsion = 11506.912669 eV Total energy + Delta-G solvation = -2369.183206 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.84485 -39.29671 -36.26846 -35.35103 -33.06558 -31.41789 -29.38076 -27.26192 -25.50383 -24.31339 -23.64659 -21.02188 -19.09440 -18.56563 -18.11409 -17.10733 -16.95173 -16.51249 -15.28734 -15.09146 -14.79941 -14.52344 -13.76943 -13.48314 -13.33676 -12.95255 -12.84566 -12.52004 -12.29466 -12.16109 -11.89323 -11.29273 -11.09700 -10.66864 -10.46838 -9.77254 -9.05085 -8.11890 -6.26602 -0.22362 0.21161 1.39588 1.41702 1.53252 1.57644 1.94429 2.43805 2.71737 2.76045 3.15157 3.52739 3.69526 3.94536 4.32890 4.42940 4.63368 4.76956 4.81800 4.92065 5.04763 5.15207 5.34855 5.52076 5.68258 5.70294 5.95313 6.08957 6.28188 6.70550 6.78026 7.15437 7.40486 8.93387 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049336 B = 0.007391 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.403465 B = 3787.452864 C = 3914.472014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.109 3.891 3 H -0.002 1.002 4 C -0.520 4.520 5 H 0.040 0.960 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.087 3.913 13 C -0.097 4.097 14 N -0.404 5.404 15 C 0.099 3.901 16 C -0.199 4.199 17 C 0.172 3.828 18 N -0.492 5.492 19 C 0.348 3.652 20 N -0.539 5.539 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.026 0.974 24 H 0.265 0.735 25 H 0.209 0.791 26 H 0.215 0.785 27 H 0.220 0.780 28 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -12.490 -15.297 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 H 0.016 0.984 4 C -0.558 4.558 5 H 0.058 0.942 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.193 1.193 12 C -0.044 4.044 13 C -0.226 4.226 14 N -0.082 5.082 15 C -0.031 4.031 16 C -0.221 4.221 17 C -0.013 4.013 18 N -0.206 5.206 19 C -0.001 4.001 20 N -0.264 5.264 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.226 0.774 26 H 0.231 0.769 27 H 0.236 0.764 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.574 -11.014 -14.744 18.412 hybrid contribution -0.677 -0.975 0.955 1.523 sum -0.103 -11.989 -13.789 18.272 Atomic orbital electron populations 1.21581 0.95391 1.00264 1.00175 1.17194 0.93819 0.93191 0.86847 0.98427 1.21147 1.31434 1.12223 0.91026 0.94180 1.25693 0.95110 0.95699 1.01630 1.70011 1.37308 1.23704 1.24257 0.85460 0.78372 0.78386 0.79119 1.19946 1.20692 1.19330 1.21680 0.90580 0.95553 0.96571 1.22568 1.03137 1.04345 0.92574 1.44046 1.20550 1.23214 1.20439 1.23202 1.02354 0.90395 0.87187 1.22370 0.94598 1.03985 1.01175 1.24265 0.97270 0.86548 0.93257 1.67924 1.23597 1.25871 1.03211 1.22158 0.88951 0.91372 0.97607 1.70491 1.21637 1.27422 1.06823 0.93287 0.91531 0.95491 0.92570 0.77398 0.76882 0.76371 0.75929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.54 71.98 0.61 -5.07 15 2 C 0.11 6.11 2.75 -12.28 -0.03 6.07 15 3 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 4 C -0.52 -30.70 8.55 25.60 0.22 -30.48 15 5 H 0.04 2.42 7.74 -2.91 -0.02 2.39 15 6 C 0.02 1.01 5.30 84.66 0.45 1.46 15 7 N -0.91 -53.81 11.32 21.45 0.24 -53.57 15 8 Si 0.96 45.11 29.54 68.60 2.03 47.14 15 9 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 15 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 12 C 0.09 4.42 5.93 41.54 0.25 4.66 15 13 C -0.10 -3.86 10.91 83.17 0.91 -2.95 15 14 N -0.40 -13.97 2.95 -357.66 -1.05 -15.02 15 15 C 0.10 1.95 11.07 83.36 0.92 2.88 15 16 C -0.20 -2.65 10.06 22.13 0.22 -2.43 15 17 C 0.17 3.38 11.27 85.26 0.96 4.34 15 18 N -0.49 -17.36 10.48 -197.25 -2.07 -19.42 15 19 C 0.35 14.94 8.92 261.39 2.33 17.27 15 20 N -0.54 -28.55 11.31 -187.64 -2.12 -30.67 15 21 H 0.05 2.14 7.25 -2.39 -0.02 2.12 15 22 H 0.07 3.58 6.07 -2.38 -0.01 3.56 15 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 15 24 H 0.27 14.63 8.31 -92.71 -0.77 13.85 15 25 H 0.21 6.80 7.34 -2.91 -0.02 6.78 15 26 H 0.21 2.07 8.06 -2.91 -0.02 2.04 15 27 H 0.22 0.27 8.06 -2.91 -0.02 0.25 15 28 H 0.22 1.96 8.06 -2.91 -0.02 1.94 15 Total: -1.00 -82.44 247.38 5.03 -77.41 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 1.17 Total: -1.62 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 6.84 Total: -4.24 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -5.00 Total: -118.69 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -82.44 5.03 -77.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.953 kcal (2) G-P(sol) polarization free energy of solvation -82.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds