Wall clock time and date at job start Mon Mar 30 2020 02:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50694 * 109.47165 * 2 1 4 4 C 1.39908 * 120.32547 * 269.97863 * 3 2 1 5 5 N 1.31718 * 120.13019 * 180.02562 * 4 3 2 6 6 C 1.32905 * 120.91228 * 359.72656 * 5 4 3 7 7 C 1.41834 * 132.57745 * 179.58476 * 6 5 4 8 8 C 1.40709 * 126.67308 * 0.73034 * 7 6 5 9 9 H 1.08000 * 120.00467 * 359.44016 * 8 7 6 10 10 C 1.39705 * 120.00159 * 179.71483 * 8 7 6 11 11 N 1.31117 * 119.99413 * 359.72348 * 10 8 7 12 12 Si 1.86798 * 119.99984 * 179.72884 * 10 8 7 13 13 H 1.48498 * 109.47416 * 59.99815 * 12 10 8 14 14 H 1.48508 * 109.46609 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99400 * 12 10 8 16 16 C 1.41334 * 106.65152 * 180.47513 * 7 6 5 17 17 N 1.30585 * 108.73649 * 0.26047 * 16 7 6 18 18 N 1.36936 * 120.86146 * 0.58487 * 6 5 4 19 19 C 1.35892 * 120.32688 * 89.99940 * 3 2 1 20 20 H 1.09001 * 109.46951 * 299.99878 * 1 2 3 21 21 H 1.08996 * 109.46656 * 59.99886 * 1 2 3 22 22 H 1.08997 * 109.46936 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46951 * 240.00122 * 2 1 3 24 24 H 1.08996 * 109.46656 * 120.00114 * 2 1 3 25 25 H 1.07999 * 119.93010 * 0.02562 * 4 3 2 26 26 H 0.97001 * 119.99364 * 179.97438 * 11 10 8 27 27 H 1.07999 * 125.62915 * 180.22789 * 16 7 6 28 28 H 1.07994 * 120.44568 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2683 2.0866 -1.2076 5 7 2.7079 3.3283 -1.2032 6 6 2.9291 3.9701 -0.0606 7 6 3.3981 5.2765 0.2310 8 6 3.7502 6.2704 -0.7007 9 1 3.6826 6.0668 -1.7592 10 6 4.1927 7.5189 -0.2566 11 7 4.2747 7.7663 1.0284 12 14 4.6673 8.8358 -1.4936 13 1 3.4976 9.1540 -2.3512 14 1 5.1003 10.0595 -0.7720 15 1 5.7821 8.3406 -2.3405 16 6 3.4373 5.3878 1.6394 17 7 3.0377 4.2592 2.1606 18 7 2.7174 3.3537 1.1437 19 6 2.2611 2.0677 1.1730 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.0896 1.5815 -2.1453 26 1 4.5823 8.6330 1.3367 27 1 3.7472 6.2618 2.1930 28 1 2.0857 1.5704 2.1154 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261191691.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:48 Heat of formation + Delta-G solvation = 77.637737 kcal Electronic energy + Delta-G solvation = -13842.954022 eV Core-core repulsion = 11473.601584 eV Total energy + Delta-G solvation = -2369.352438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.44729 -38.80573 -35.80273 -35.26331 -33.43525 -30.86823 -29.81493 -26.88187 -25.39635 -24.28941 -22.23057 -21.81376 -19.54645 -18.16114 -17.77982 -16.51603 -16.40354 -16.18542 -15.06597 -14.86792 -14.58191 -14.02078 -13.71960 -13.51817 -13.10790 -13.01252 -12.95591 -12.78695 -12.29401 -11.99469 -11.83232 -11.77283 -11.36627 -10.97377 -10.30456 -9.82639 -8.89554 -8.63644 -6.02751 0.10657 0.33066 1.41383 1.44137 1.54193 1.81995 2.15172 2.23986 2.70888 3.40688 3.57103 3.73895 3.98398 4.09753 4.29918 4.61779 4.74046 4.81641 4.88433 4.93784 5.14014 5.17976 5.37914 5.41551 5.49010 5.68457 5.79671 6.17284 6.36251 6.61791 6.86597 7.14502 7.35441 8.35913 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.055659 B = 0.007659 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.946450 B = 3654.864663 C = 4059.503278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.178 4.178 4 C 0.082 3.918 5 N -0.450 5.450 6 C 0.061 3.939 7 C -0.025 4.025 8 C -0.433 4.433 9 H 0.071 0.929 10 C 0.022 3.978 11 N -0.842 5.842 12 Si 1.002 2.998 13 H -0.263 1.263 14 H -0.261 1.261 15 H -0.263 1.263 16 C 0.015 3.985 17 N -0.338 5.338 18 N -0.341 5.341 19 C 0.106 3.894 20 H 0.042 0.958 21 H 0.050 0.950 22 H 0.082 0.918 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.191 0.809 26 H 0.293 0.707 27 H 0.213 0.787 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 -9.670 -2.113 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.185 4.185 4 C -0.103 4.103 5 N -0.159 5.159 6 C -0.163 4.163 7 C -0.036 4.036 8 C -0.466 4.466 9 H 0.090 0.910 10 C -0.189 4.189 11 N -0.471 5.471 12 Si 0.822 3.178 13 H -0.188 1.188 14 H -0.185 1.185 15 H -0.188 1.188 16 C -0.165 4.165 17 N -0.163 5.163 18 N -0.121 5.121 19 C -0.024 4.024 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.100 0.900 23 H 0.115 0.885 24 H 0.104 0.896 25 H 0.208 0.792 26 H 0.104 0.896 27 H 0.229 0.771 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.758 -9.330 -1.493 10.169 hybrid contribution 0.243 0.770 -0.201 0.832 sum -3.515 -8.560 -1.694 9.407 Atomic orbital electron populations 1.21772 0.94296 1.02685 1.01484 1.20311 0.96126 0.87920 1.04651 1.20546 1.06344 1.00344 0.91292 1.23334 0.98218 0.89412 0.99336 1.67432 1.11674 1.10631 1.26212 1.20297 1.17147 0.96754 0.82057 1.18084 1.01261 0.90555 0.93701 1.18953 1.37493 0.96289 0.93839 0.91038 1.26774 0.93002 1.00940 0.98173 1.69440 1.36830 1.24859 1.16004 0.84945 0.79257 0.75963 0.77645 1.18783 1.18473 1.18791 1.25065 1.01105 0.95876 0.94431 1.76718 1.26217 1.01475 1.11932 1.46313 1.48283 1.10882 1.06603 1.22091 0.97168 0.81537 1.01645 0.93917 0.93121 0.89953 0.88462 0.89631 0.79227 0.89591 0.77096 0.80294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.90 71.99 0.71 -1.90 15 2 C -0.05 -1.02 6.08 29.85 0.18 -0.83 15 3 C -0.18 -5.69 5.12 -20.01 -0.10 -5.79 15 4 C 0.08 3.02 10.97 85.11 0.93 3.96 15 5 N -0.45 -22.19 10.45 -190.99 -2.00 -24.19 15 6 C 0.06 3.36 7.92 134.28 1.06 4.43 15 7 C -0.03 -1.48 5.97 -21.02 -0.13 -1.60 15 8 C -0.43 -24.91 9.38 23.23 0.22 -24.70 15 9 H 0.07 4.10 7.84 -2.91 -0.02 4.08 15 10 C 0.02 1.15 5.49 85.15 0.47 1.62 15 11 N -0.84 -43.48 10.31 21.80 0.22 -43.25 15 12 Si 1.00 39.36 29.56 68.60 2.03 41.39 15 13 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 14 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 15 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 16 C 0.01 0.84 10.87 85.64 0.93 1.77 15 17 N -0.34 -18.15 12.55 -56.17 -0.71 -18.86 15 18 N -0.34 -17.20 3.88 -190.80 -0.74 -17.94 15 19 C 0.11 4.08 10.96 83.42 0.91 4.99 15 20 H 0.04 0.86 8.14 -2.39 -0.02 0.84 15 21 H 0.05 0.98 8.14 -2.39 -0.02 0.96 15 22 H 0.08 1.06 8.14 -2.39 -0.02 1.04 15 23 H 0.10 1.53 8.10 -2.39 -0.02 1.51 15 24 H 0.09 1.43 8.09 -2.39 -0.02 1.41 15 25 H 0.19 5.18 8.06 -2.91 -0.02 5.16 15 26 H 0.29 13.50 8.30 -92.71 -0.77 12.73 15 27 H 0.21 11.82 5.72 -2.91 -0.02 11.80 15 28 H 0.18 5.51 8.06 -2.91 -0.02 5.49 15 Total: -1.00 -68.72 249.30 5.17 -63.54 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.17 Total: 17.36 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.19 Total: -18.06 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.22 Total: -104.23 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -68.72 5.17 -63.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261191691.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.180 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds