Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40539 * 120.12948 * 2 1 4 4 C 1.34954 * 120.36843 * 180.02562 * 3 2 1 5 5 N 1.36382 * 120.51193 * 359.97438 * 4 3 2 6 6 C 1.37344 * 120.44794 * 0.04416 * 5 4 3 7 7 C 1.36025 * 120.12262 * 180.02562 * 2 1 3 8 8 N 1.32305 * 106.83401 * 180.02562 * 6 5 4 9 9 N 1.28686 * 109.48166 * 359.97263 * 8 6 5 10 10 C 1.30798 * 110.29547 * 0.02562 * 9 8 6 11 11 C 1.50699 * 126.25238 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47337 * 270.00714 * 11 10 9 13 13 H 1.07999 * 119.99961 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99979 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00365 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47318 * 59.99805 * 16 14 12 18 18 H 1.48495 * 109.47647 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47011 * 300.00113 * 16 14 12 20 20 H 1.09001 * 109.47310 * 269.97656 * 1 2 3 21 21 H 1.09004 * 109.47166 * 29.97950 * 1 2 3 22 22 H 1.08997 * 109.47388 * 149.97868 * 1 2 3 23 23 H 1.08004 * 119.81762 * 0.04346 * 3 2 1 24 24 H 1.08003 * 119.74400 * 179.97438 * 4 3 2 25 25 H 1.07996 * 120.39113 * 359.70413 * 7 2 1 26 26 H 1.09006 * 109.46592 * 30.00048 * 11 10 9 27 27 H 1.08995 * 109.47206 * 150.00081 * 11 10 9 28 28 H 0.97002 * 120.00346 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2124 1.2155 0.0000 4 6 3.5620 1.2211 -0.0005 5 7 4.2593 0.0491 -0.0005 6 6 3.5976 -1.1545 -0.0009 7 6 2.1896 -1.1765 -0.0005 8 7 4.5227 -2.1003 -0.0003 9 7 5.6901 -1.5588 -0.0001 10 6 5.5855 -0.2551 -0.0001 11 6 6.7256 0.7304 0.0007 12 6 7.1049 1.0587 1.4217 13 1 6.5733 0.6000 2.2422 14 6 8.1306 1.9447 1.6742 15 7 8.7784 2.5030 0.6750 16 14 8.6004 2.3523 3.4356 17 1 9.0176 1.1113 4.1365 18 1 9.7239 3.3232 3.4364 19 1 7.4327 2.9467 4.1345 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6715 2.1504 0.0007 24 1 4.0939 2.1611 -0.0009 25 1 1.6581 -2.1166 0.0039 26 1 7.5828 0.2947 -0.5127 27 1 6.4188 1.6413 -0.5132 28 1 9.5003 3.1261 0.8527 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261205680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = 71.087881 kcal Electronic energy + Delta-G solvation = -13803.705671 eV Core-core repulsion = 11434.069209 eV Total energy + Delta-G solvation = -2369.636461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.41900 -39.33965 -36.01010 -35.15281 -33.00526 -31.62165 -29.93990 -27.97723 -25.61966 -24.80865 -22.96422 -22.19926 -18.89891 -18.69921 -17.96333 -17.30110 -16.77462 -15.98557 -15.87018 -14.79293 -14.52681 -14.21962 -13.81745 -13.53906 -13.25354 -13.14812 -12.90535 -12.73291 -12.63824 -12.40116 -12.06788 -11.96639 -11.49056 -11.36616 -10.69642 -10.41870 -8.91553 -8.29520 -6.45642 -0.25004 0.21998 1.37312 1.41005 1.46121 1.50381 1.76983 2.36117 2.38628 3.00984 3.17830 3.58406 3.74848 3.86280 3.95878 4.10038 4.54945 4.63298 4.81832 4.90083 4.96116 5.02960 5.15583 5.23485 5.29872 5.39131 5.57279 5.61282 5.89963 6.06597 6.59306 7.23341 7.60394 8.78547 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.039367 B = 0.007834 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.076144 B = 3573.330629 C = 3883.425233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.035 4.035 3 C -0.128 4.128 4 C 0.055 3.945 5 N -0.399 5.399 6 C 0.174 3.826 7 C -0.115 4.115 8 N -0.351 5.351 9 N -0.309 5.309 10 C 0.177 3.823 11 C 0.114 3.886 12 C -0.539 4.539 13 H 0.043 0.957 14 C 0.021 3.979 15 N -0.917 5.917 16 Si 0.968 3.032 17 H -0.277 1.277 18 H -0.272 1.272 19 H -0.264 1.264 20 H 0.093 0.907 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.200 0.800 24 H 0.176 0.824 25 H 0.172 0.828 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 2.155 -0.857 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.042 4.042 3 C -0.149 4.149 4 C -0.067 4.067 5 N -0.079 5.079 6 C -0.076 4.076 7 C -0.137 4.137 8 N -0.195 5.195 9 N -0.146 5.146 10 C -0.088 4.088 11 C 0.075 3.925 12 C -0.578 4.578 13 H 0.061 0.939 14 C -0.179 4.179 15 N -0.556 5.556 16 Si 0.791 3.209 17 H -0.202 1.202 18 H -0.197 1.197 19 H -0.188 1.188 20 H 0.111 0.889 21 H 0.114 0.886 22 H 0.103 0.897 23 H 0.216 0.784 24 H 0.194 0.806 25 H 0.189 0.811 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.386 0.787 -0.923 17.428 hybrid contribution 0.575 1.140 0.693 1.453 sum -16.810 1.927 -0.231 16.922 Atomic orbital electron populations 1.20910 0.85814 1.05191 1.04352 1.20414 0.99291 0.90784 0.93687 1.21389 0.90510 1.01346 1.01625 1.22319 0.94350 0.88586 1.01404 1.43864 1.07171 1.09062 1.47809 1.22960 0.97158 0.81940 1.05493 1.20385 0.85520 1.01908 1.05843 1.74677 0.94288 1.25337 1.25244 1.74046 1.17077 1.05293 1.18169 1.25701 0.84379 0.94220 1.04477 1.17543 0.87135 0.89685 0.98122 1.21007 1.18832 1.26784 0.91134 0.93863 1.25760 0.95137 0.95002 1.02039 1.70014 1.22803 1.29716 1.33027 0.85465 0.78391 0.78104 0.78900 1.20249 1.19690 1.18835 0.88906 0.88557 0.89730 0.78352 0.80647 0.81074 0.95205 0.94411 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.02 71.24 0.71 -0.30 15 2 C -0.03 -0.69 5.88 -19.82 -0.12 -0.80 15 3 C -0.13 -2.63 9.67 22.08 0.21 -2.41 15 4 C 0.06 1.70 10.91 83.23 0.91 2.61 15 5 N -0.40 -16.66 2.95 -342.88 -1.01 -17.67 15 6 C 0.17 7.04 7.92 134.06 1.06 8.11 15 7 C -0.12 -3.17 9.75 22.39 0.22 -2.95 15 8 N -0.35 -17.05 12.31 -55.40 -0.68 -17.73 15 9 N -0.31 -16.57 12.19 -49.69 -0.61 -17.17 15 10 C 0.18 8.96 7.33 137.71 1.01 9.97 15 11 C 0.11 6.21 5.50 29.10 0.16 6.37 15 12 C -0.54 -30.86 9.09 25.60 0.23 -30.63 15 13 H 0.04 2.53 7.74 -2.91 -0.02 2.51 15 14 C 0.02 1.17 5.46 84.65 0.46 1.63 15 15 N -0.92 -52.75 13.29 21.45 0.28 -52.47 15 16 Si 0.97 43.44 29.54 68.60 2.03 45.46 15 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 18 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 20 H 0.09 0.71 8.14 -2.39 -0.02 0.69 15 21 H 0.10 0.54 8.10 -2.39 -0.02 0.52 15 22 H 0.08 0.67 8.08 -2.39 -0.02 0.65 15 23 H 0.20 2.12 8.06 -2.91 -0.02 2.10 15 24 H 0.18 5.09 8.06 -2.91 -0.02 5.06 15 25 H 0.17 3.74 8.06 -2.91 -0.02 3.72 15 26 H 0.03 1.75 8.14 -2.38 -0.02 1.73 15 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 15 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 15 Total: -1.00 -74.50 253.94 6.03 -68.47 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: 1.16 Total: -0.50 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.86 Total: -8.39 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -2.01 Total: -105.04 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.50 6.03 -68.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.558 kcal (2) G-P(sol) polarization free energy of solvation -74.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds