Wall clock time and date at job start Mon Mar 30 2020 02:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40540 * 119.81814 * 2 1 4 4 C 1.36028 * 119.74536 * 179.74552 * 3 2 1 5 5 C 1.40812 * 119.22795 * 0.25148 * 4 3 2 6 6 N 1.32301 * 133.46807 * 179.97438 * 5 4 3 7 7 N 1.28684 * 109.48557 * 180.02562 * 6 5 4 8 8 C 1.30800 * 110.28793 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.24422 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47146 * 269.97984 * 9 8 7 11 11 H 1.07992 * 120.00112 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99714 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00004 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99657 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47148 * 60.00294 * 14 12 10 16 16 H 1.48504 * 109.47138 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47434 * 300.00289 * 14 12 10 18 18 N 1.36062 * 107.51004 * 0.02562 * 8 7 6 19 19 C 1.34956 * 119.81631 * 180.24539 * 2 1 3 20 20 H 1.08998 * 109.47043 * 89.99633 * 1 2 3 21 21 H 1.09000 * 109.47661 * 209.99982 * 1 2 3 22 22 H 1.09004 * 109.46801 * 329.99929 * 1 2 3 23 23 H 1.08002 * 120.12952 * 0.02645 * 3 2 1 24 24 H 1.08004 * 120.38365 * 180.27495 * 4 3 2 25 25 H 1.09005 * 109.47291 * 29.98164 * 9 8 7 26 26 H 1.08998 * 109.47006 * 149.97417 * 9 8 7 27 27 H 0.97007 * 119.99642 * 179.97438 * 13 12 10 28 28 H 1.08009 * 119.74473 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.2193 0.0000 4 6 3.5661 1.2176 0.0052 5 6 4.2521 -0.0121 0.0052 6 7 5.5341 -0.3392 0.0090 7 7 5.6501 -1.6208 0.0064 8 6 4.4691 -2.1831 0.0013 9 6 4.1872 -3.6634 -0.0025 10 6 4.0974 -4.1540 -1.4246 11 1 4.2308 -3.4630 -2.2436 12 6 3.8451 -5.4853 -1.6799 13 7 3.6832 -6.3270 -0.6824 14 14 3.7331 -6.0933 -3.4426 15 1 5.0185 -5.8318 -4.1390 16 1 3.4554 -7.5521 -3.4464 17 1 2.6361 -5.3792 -4.1439 18 7 3.5417 -1.1875 0.0002 19 6 2.1780 -1.1709 -0.0050 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6650 2.1542 0.0004 24 1 4.1135 2.1486 0.0098 25 1 4.9920 -4.1880 0.5127 26 1 3.2435 -3.8549 0.5082 27 1 3.5053 -7.2635 -0.8621 28 1 1.6308 -2.1021 -0.0094 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207977.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:53 Heat of formation + Delta-G solvation = 71.312141 kcal Electronic energy + Delta-G solvation = -13870.523309 eV Core-core repulsion = 11500.896572 eV Total energy + Delta-G solvation = -2369.626737 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.42830 -39.37851 -35.91621 -34.80137 -33.63522 -31.98086 -29.24626 -27.98773 -25.66075 -24.60710 -23.43298 -22.10491 -18.90983 -18.72470 -17.99567 -17.31470 -16.75288 -15.99372 -15.77321 -14.82251 -14.56569 -14.28445 -13.82348 -13.49164 -13.24193 -12.99237 -12.95460 -12.71994 -12.63768 -12.40102 -12.12654 -12.06364 -11.55432 -11.50484 -10.70531 -10.25744 -8.93634 -8.30456 -6.46651 -0.24747 0.21482 1.36558 1.40355 1.45337 1.49688 1.75041 2.35576 2.39197 3.00091 3.18848 3.57166 3.72378 3.92405 3.95084 4.02899 4.49380 4.67660 4.75944 4.90874 5.00256 5.05451 5.13587 5.26016 5.27290 5.33069 5.56174 5.60539 5.88789 6.05039 6.58212 7.22344 7.59139 8.77819 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.008842 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.470025 B = 3165.866026 C = 3651.573168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.099 4.099 3 C -0.060 4.060 4 C -0.098 4.098 5 C 0.164 3.836 6 N -0.346 5.346 7 N -0.308 5.308 8 C 0.175 3.825 9 C 0.114 3.886 10 C -0.540 4.540 11 H 0.043 0.957 12 C 0.021 3.979 13 N -0.918 5.918 14 Si 0.968 3.032 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.264 1.264 18 N -0.393 5.393 19 C 0.038 3.962 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.104 0.896 23 H 0.199 0.801 24 H 0.181 0.819 25 H 0.030 0.970 26 H 0.035 0.965 27 H 0.272 0.728 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.529 13.999 0.847 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.084 4.084 4 C -0.119 4.119 5 C -0.086 4.086 6 N -0.191 5.191 7 N -0.146 5.146 8 C -0.089 4.089 9 C 0.075 3.925 10 C -0.578 4.578 11 H 0.061 0.939 12 C -0.179 4.179 13 N -0.556 5.556 14 Si 0.791 3.209 15 H -0.202 1.202 16 H -0.196 1.196 17 H -0.189 1.189 18 N -0.072 5.072 19 C -0.084 4.084 20 H 0.106 0.894 21 H 0.092 0.908 22 H 0.123 0.877 23 H 0.216 0.784 24 H 0.198 0.802 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.865 13.837 0.920 17.018 hybrid contribution -0.672 -1.075 -0.692 1.444 sum -10.537 12.762 0.227 16.551 Atomic orbital electron populations 1.20810 0.85631 1.05051 1.04182 1.20139 0.99396 0.90512 1.00248 1.21668 0.92297 0.99636 0.94784 1.20671 0.94897 0.93194 1.03127 1.23084 0.89614 0.89741 1.06166 1.74665 1.14202 1.05433 1.24806 1.74053 1.21248 1.01026 1.18232 1.25685 0.83654 0.94957 1.04652 1.17533 0.97521 0.79302 0.98135 1.21008 1.51263 0.94477 0.91097 0.93890 1.25770 0.93821 0.96211 1.02118 1.70017 1.47880 1.04557 1.33116 0.85464 0.78902 0.77659 0.78828 1.20160 1.19600 1.18867 1.43781 1.08213 1.07898 1.47266 1.22028 0.79563 1.02691 1.04068 0.89381 0.90822 0.87724 0.78433 0.80190 0.95169 0.94672 0.91862 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.00 71.24 0.71 -0.53 15 2 C -0.10 -2.15 5.85 -20.06 -0.12 -2.27 15 3 C -0.06 -1.09 9.73 22.32 0.22 -0.87 15 4 C -0.10 -2.54 10.11 22.39 0.23 -2.31 15 5 C 0.16 6.55 7.92 134.07 1.06 7.61 15 6 N -0.35 -16.69 12.31 -55.40 -0.68 -17.37 15 7 N -0.31 -16.53 12.19 -49.69 -0.61 -17.13 15 8 C 0.17 8.94 7.33 137.71 1.01 9.95 15 9 C 0.11 6.28 5.50 29.10 0.16 6.44 15 10 C -0.54 -31.18 9.09 25.60 0.23 -30.95 15 11 H 0.04 2.54 7.74 -2.91 -0.02 2.52 15 12 C 0.02 1.19 5.46 84.66 0.46 1.65 15 13 N -0.92 -53.05 13.29 21.45 0.28 -52.77 15 14 Si 0.97 43.61 29.54 68.60 2.03 45.63 15 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 18 N -0.39 -16.58 2.95 -342.89 -1.01 -17.59 15 19 C 0.04 1.24 10.52 83.23 0.88 2.11 15 20 H 0.09 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.07 0.94 8.07 -2.39 -0.02 0.92 15 22 H 0.10 0.70 8.09 -2.39 -0.02 0.68 15 23 H 0.20 1.45 8.06 -2.91 -0.02 1.43 15 24 H 0.18 3.47 8.06 -2.91 -0.02 3.45 15 25 H 0.03 1.79 8.14 -2.38 -0.02 1.77 15 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 15 27 H 0.27 14.67 8.31 -92.70 -0.77 13.90 15 28 H 0.17 5.25 8.06 -2.91 -0.02 5.23 15 Total: -1.00 -75.00 253.90 6.01 -68.99 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.16 Total: -0.59 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.84 Total: -9.17 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -2.01 Total: -104.87 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -75.00 6.01 -68.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207977.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.304 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds