Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39899 * 119.93967 * 2 1 4 4 C 1.35887 * 119.35306 * 180.22673 * 3 2 1 5 5 C 1.50699 * 120.45243 * 179.81488 * 4 3 2 6 6 N 1.36498 * 119.10121 * 359.54457 * 4 3 2 7 7 N 1.39869 * 132.14521 * 180.22732 * 6 4 3 8 8 C 1.30578 * 109.83957 * 180.02562 * 7 6 4 9 9 C 1.41331 * 108.74090 * 0.02562 * 8 7 6 10 10 C 1.40712 * 126.67610 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00117 * 161.32292 * 10 9 8 12 12 C 1.39696 * 119.99913 * 341.33093 * 10 9 8 13 13 N 1.31111 * 120.00155 * 163.85662 * 12 10 9 14 14 Si 1.86801 * 120.00101 * 343.84973 * 12 10 9 15 15 H 1.48493 * 109.47272 * 91.73767 * 14 12 10 16 16 H 1.48501 * 109.47288 * 211.74113 * 14 12 10 17 17 H 1.48507 * 109.46930 * 331.73444 * 14 12 10 18 18 C 1.36932 * 119.63681 * 0.24823 * 6 4 3 19 19 N 1.31727 * 119.93173 * 179.78239 * 2 1 3 20 20 H 1.08998 * 109.47443 * 270.21690 * 1 2 3 21 21 H 1.09003 * 109.46762 * 30.21649 * 1 2 3 22 22 H 1.09002 * 109.47451 * 150.21382 * 1 2 3 23 23 H 1.08004 * 120.32263 * 0.02562 * 3 2 1 24 24 H 1.08999 * 109.47428 * 269.72932 * 5 4 3 25 25 H 1.08995 * 109.47125 * 149.72270 * 5 4 3 26 26 H 1.09000 * 109.47125 * 29.72271 * 5 4 3 27 27 H 1.07999 * 125.63181 * 179.97438 * 8 7 6 28 28 H 0.97000 * 120.00410 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2052 1.2123 0.0000 4 6 3.5640 1.1984 -0.0047 5 6 4.3410 2.4896 -0.0090 6 7 4.2156 -0.0010 0.0002 7 7 5.5749 -0.3306 0.0015 8 6 5.7162 -1.6287 0.0062 9 6 4.4347 -2.2249 0.0077 10 6 4.1488 -3.6026 0.0130 11 1 3.1713 -3.9501 0.3132 12 6 5.1294 -4.5210 -0.3699 13 7 4.9904 -5.7904 -0.0730 14 14 6.6386 -3.9404 -1.3051 15 1 7.7226 -3.6164 -0.3433 16 1 7.0959 -5.0145 -2.2228 17 1 6.2970 -2.7286 -2.0927 18 6 3.4931 -1.1642 0.0045 19 7 2.1642 -1.1416 0.0043 20 1 -0.3634 0.0039 1.0276 21 1 -0.3633 0.8881 -0.5172 22 1 -0.3634 -0.8919 -0.5105 23 1 1.6694 2.1501 0.0004 24 1 4.5289 2.7972 -1.0377 25 1 5.2905 2.3440 0.5060 26 1 3.7654 3.2617 0.5015 27 1 6.6569 -2.1592 0.0079 28 1 5.6711 -6.4282 -0.3392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211039.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 102.948183 kcal Electronic energy + Delta-G solvation = -14077.110386 eV Core-core repulsion = 11708.855491 eV Total energy + Delta-G solvation = -2368.254895 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88144 -37.19956 -34.31954 -33.33117 -31.11061 -30.01751 -27.91893 -27.01139 -24.72743 -22.25017 -20.91682 -19.89519 -17.51255 -16.89922 -15.90759 -15.07473 -14.84404 -14.27024 -13.42638 -13.18865 -13.06376 -12.86460 -12.65779 -12.37077 -11.96793 -11.58477 -11.39021 -11.27662 -11.04277 -10.82308 -10.18775 -9.81572 -9.68579 -9.24953 -8.66568 -8.25862 -7.14144 -7.00764 -4.11302 1.61237 1.91405 2.92570 3.07386 3.17016 3.30656 3.62255 3.86369 4.33217 4.86956 5.02522 5.14644 5.29287 5.69438 5.71184 5.73073 5.82563 5.98309 6.07200 6.16112 6.25221 6.43839 6.57850 6.64476 6.97137 7.24597 7.42515 7.76578 8.25624 8.37961 8.53681 8.79679 9.08166 10.02124 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.010736 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.808040 B = 2607.483564 C = 3277.622921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.061 3.939 3 C -0.209 4.209 4 C 0.147 3.853 5 C -0.105 4.105 6 N -0.330 5.330 7 N -0.291 5.291 8 C -0.030 4.030 9 C 0.009 3.991 10 C -0.381 4.381 11 H 0.099 0.901 12 C 0.077 3.923 13 N -0.802 5.802 14 Si 0.902 3.098 15 H -0.264 1.264 16 H -0.283 1.283 17 H -0.246 1.246 18 C 0.100 3.900 19 N -0.397 5.397 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.138 0.862 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.173 0.827 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 10.113 -0.959 10.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.234 4.234 4 C 0.035 3.965 5 C -0.162 4.162 6 N -0.114 5.114 7 N -0.117 5.117 8 C -0.210 4.210 9 C -0.002 4.002 10 C -0.412 4.412 11 H 0.117 0.883 12 C -0.142 4.142 13 N -0.427 5.427 14 Si 0.728 3.272 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.170 1.170 18 C -0.125 4.125 19 N -0.107 5.107 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.155 0.845 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.189 0.811 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.309 9.931 -0.953 10.062 hybrid contribution 0.739 0.070 -0.361 0.826 sum -0.570 10.001 -1.314 10.103 Atomic orbital electron populations 1.20351 0.89363 1.02172 1.01735 1.20868 0.96108 0.87661 1.05533 1.20899 0.91439 0.99763 1.11322 1.20106 0.91616 0.85790 0.98994 1.20722 1.00374 0.92091 1.03013 1.45862 1.05530 1.05142 1.54852 1.76578 0.92140 1.16446 1.26512 1.23693 0.98487 0.91000 1.07855 1.17652 0.88051 0.92799 1.01701 1.18721 1.00787 0.87156 1.34554 0.88257 1.26046 0.99251 0.94504 0.94372 1.69754 1.34709 1.03207 1.35003 0.86548 0.80432 0.79613 0.80567 1.19015 1.20953 1.16997 1.19845 0.87232 0.86038 1.19345 1.67150 1.05590 1.28908 1.09059 0.91780 0.91838 0.91346 0.84470 0.90625 0.90497 0.90368 0.81054 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.19 36.00 0.37 -0.80 15 2 C 0.06 1.22 6.83 -82.02 -0.56 0.66 15 3 C -0.21 -3.70 9.38 -39.80 -0.37 -4.07 15 4 C 0.15 2.86 6.86 -81.36 -0.56 2.30 15 5 C -0.10 -1.51 10.09 36.00 0.36 -1.14 15 6 N -0.33 -7.93 3.88 -7.95 -0.03 -7.96 15 7 N -0.29 -7.08 12.37 30.89 0.38 -6.70 15 8 C -0.03 -0.76 9.23 -16.91 -0.16 -0.91 15 9 C 0.01 0.24 5.52 -106.41 -0.59 -0.34 15 10 C -0.38 -10.60 9.89 -38.10 -0.38 -10.97 15 11 H 0.10 2.96 8.06 -52.48 -0.42 2.54 15 12 C 0.08 2.00 5.50 -17.31 -0.10 1.90 15 13 N -0.80 -21.06 13.94 55.54 0.77 -20.28 15 14 Si 0.90 19.85 24.52 -169.99 -4.17 15.68 15 15 H -0.26 -5.44 6.69 56.52 0.38 -5.06 15 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 17 H -0.25 -5.64 6.54 56.52 0.37 -5.27 15 18 C 0.10 2.64 7.92 -155.53 -1.23 1.41 15 19 N -0.40 -9.78 10.37 -7.97 -0.08 -9.86 15 20 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.06 0.75 8.09 -51.93 -0.42 0.33 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.14 1.81 8.06 -52.48 -0.42 1.39 15 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.08 1.17 8.10 -51.93 -0.42 0.75 15 26 H 0.08 0.86 8.09 -51.93 -0.42 0.44 15 27 H 0.17 3.93 4.21 -52.49 -0.22 3.71 15 28 H 0.29 6.77 8.30 -40.82 -0.34 6.43 15 LS Contribution 244.17 15.07 3.68 3.68 Total: -1.00 -30.66 244.17 -5.44 -36.10 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -2.79 Total: 1.32 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -3.21 Total: -11.97 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 1.04 Total: -44.81 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.17 Total: 15.68 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.66 -5.44 -36.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211039.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.047 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds