Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39899 * 119.93967 * 2 1 4 4 C 1.35887 * 119.35306 * 180.22673 * 3 2 1 5 5 C 1.50699 * 120.45243 * 179.81488 * 4 3 2 6 6 N 1.36498 * 119.10121 * 359.54457 * 4 3 2 7 7 N 1.39869 * 132.14521 * 180.22732 * 6 4 3 8 8 C 1.30578 * 109.83957 * 180.02562 * 7 6 4 9 9 C 1.41331 * 108.74090 * 0.02562 * 8 7 6 10 10 C 1.40712 * 126.67610 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00117 * 161.32292 * 10 9 8 12 12 C 1.39696 * 119.99913 * 341.33093 * 10 9 8 13 13 N 1.31111 * 120.00155 * 163.85662 * 12 10 9 14 14 Si 1.86801 * 120.00101 * 343.84973 * 12 10 9 15 15 H 1.48493 * 109.47272 * 91.73767 * 14 12 10 16 16 H 1.48501 * 109.47288 * 211.74113 * 14 12 10 17 17 H 1.48507 * 109.46930 * 331.73444 * 14 12 10 18 18 C 1.36932 * 119.63681 * 0.24823 * 6 4 3 19 19 N 1.31727 * 119.93173 * 179.78239 * 2 1 3 20 20 H 1.08998 * 109.47443 * 270.21690 * 1 2 3 21 21 H 1.09003 * 109.46762 * 30.21649 * 1 2 3 22 22 H 1.09002 * 109.47451 * 150.21382 * 1 2 3 23 23 H 1.08004 * 120.32263 * 0.02562 * 3 2 1 24 24 H 1.08999 * 109.47428 * 269.72932 * 5 4 3 25 25 H 1.08995 * 109.47125 * 149.72270 * 5 4 3 26 26 H 1.09000 * 109.47125 * 29.72271 * 5 4 3 27 27 H 1.07999 * 125.63181 * 179.97438 * 8 7 6 28 28 H 0.97000 * 120.00410 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2052 1.2123 0.0000 4 6 3.5640 1.1984 -0.0047 5 6 4.3410 2.4896 -0.0090 6 7 4.2156 -0.0010 0.0002 7 7 5.5749 -0.3306 0.0015 8 6 5.7162 -1.6287 0.0062 9 6 4.4347 -2.2249 0.0077 10 6 4.1488 -3.6026 0.0130 11 1 3.1713 -3.9501 0.3132 12 6 5.1294 -4.5210 -0.3699 13 7 4.9904 -5.7904 -0.0730 14 14 6.6386 -3.9404 -1.3051 15 1 7.7226 -3.6164 -0.3433 16 1 7.0959 -5.0145 -2.2228 17 1 6.2970 -2.7286 -2.0927 18 6 3.4931 -1.1642 0.0045 19 7 2.1642 -1.1416 0.0043 20 1 -0.3634 0.0039 1.0276 21 1 -0.3633 0.8881 -0.5172 22 1 -0.3634 -0.8919 -0.5105 23 1 1.6694 2.1501 0.0004 24 1 4.5289 2.7972 -1.0377 25 1 5.2905 2.3440 0.5060 26 1 3.7654 3.2617 0.5015 27 1 6.6569 -2.1592 0.0079 28 1 5.6711 -6.4282 -0.3392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211039.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 81.401023 kcal Electronic energy + Delta-G solvation = -14078.044741 eV Core-core repulsion = 11708.855491 eV Total energy + Delta-G solvation = -2369.189250 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.72082 -38.95566 -36.06231 -35.06975 -32.78289 -31.76419 -29.55654 -28.36988 -26.59776 -24.03577 -22.55868 -21.71730 -19.32563 -18.68586 -17.65137 -16.86352 -16.60495 -15.92999 -15.10869 -14.75085 -14.45711 -14.37866 -14.18447 -13.60329 -13.50002 -13.14765 -13.01464 -12.90823 -12.72882 -12.47400 -11.94652 -11.57012 -11.52746 -11.03756 -10.40439 -9.99022 -9.00659 -8.84680 -6.10408 -0.03159 0.17024 1.17081 1.31279 1.41338 1.56819 1.75751 2.10092 2.57743 3.20452 3.33039 3.40254 3.71421 4.24059 4.30501 4.53544 4.56386 4.60510 4.67549 4.83097 4.89161 4.97244 5.05686 5.16760 5.23042 5.57663 5.64651 6.00899 6.17279 6.50949 6.65251 6.90178 7.29456 8.26061 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035898 B = 0.010736 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.808040 B = 2607.483564 C = 3277.622921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.111 3.889 3 C -0.210 4.210 4 C 0.139 3.861 5 C -0.101 4.101 6 N -0.328 5.328 7 N -0.309 5.309 8 C -0.029 4.029 9 C -0.038 4.038 10 C -0.433 4.433 11 H 0.048 0.952 12 C 0.041 3.959 13 N -0.856 5.856 14 Si 0.960 3.040 15 H -0.239 1.239 16 H -0.267 1.267 17 H -0.263 1.263 18 C 0.100 3.900 19 N -0.471 5.471 20 H 0.089 0.911 21 H 0.112 0.888 22 H 0.061 0.939 23 H 0.203 0.797 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.186 0.814 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 15.008 -1.367 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.234 4.234 4 C 0.027 3.973 5 C -0.158 4.158 6 N -0.109 5.109 7 N -0.136 5.136 8 C -0.206 4.206 9 C -0.049 4.049 10 C -0.465 4.465 11 H 0.067 0.933 12 C -0.172 4.172 13 N -0.485 5.485 14 Si 0.783 3.217 15 H -0.164 1.164 16 H -0.193 1.193 17 H -0.187 1.187 18 C -0.125 4.125 19 N -0.183 5.183 20 H 0.107 0.893 21 H 0.131 0.869 22 H 0.080 0.920 23 H 0.220 0.780 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.144 0.856 27 H 0.202 0.798 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.342 14.823 -1.350 15.067 hybrid contribution 0.535 -0.797 -0.187 0.978 sum -1.807 14.026 -1.537 14.225 Atomic orbital electron populations 1.20673 0.85277 1.04325 1.03934 1.22299 0.98965 0.87539 0.96523 1.21690 0.90889 1.01395 1.09463 1.21443 0.93153 0.86216 0.96477 1.20934 0.99923 0.90148 1.04785 1.46423 1.05694 1.06308 1.52481 1.76582 0.92003 1.15772 1.29224 1.23833 0.98354 0.91286 1.07153 1.17768 0.89468 0.92779 1.04892 1.18376 0.99691 0.88600 1.39881 0.93329 1.26663 1.01636 0.94296 0.94595 1.69793 1.36561 1.04179 1.37932 0.85680 0.77734 0.78650 0.79673 1.16421 1.19322 1.18721 1.20238 0.88332 0.86954 1.17007 1.67378 1.05051 1.31432 1.14450 0.89299 0.86930 0.92023 0.77960 0.88638 0.91552 0.85649 0.79779 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.06 10.19 71.23 0.73 -1.33 15 2 C 0.11 3.97 6.83 42.98 0.29 4.27 15 3 C -0.21 -6.10 9.38 22.13 0.21 -5.89 15 4 C 0.14 4.79 6.86 41.29 0.28 5.08 15 5 C -0.10 -2.32 10.09 71.24 0.72 -1.60 15 6 N -0.33 -15.32 3.88 -179.08 -0.69 -16.02 15 7 N -0.31 -14.94 12.37 -56.18 -0.70 -15.64 15 8 C -0.03 -1.49 9.23 85.64 0.79 -0.70 15 9 C -0.04 -2.15 5.52 -21.02 -0.12 -2.27 15 10 C -0.43 -26.50 9.89 23.23 0.23 -26.27 15 11 H 0.05 3.28 8.06 -2.91 -0.02 3.26 15 12 C 0.04 2.27 5.50 85.15 0.47 2.74 15 13 N -0.86 -48.83 13.94 21.80 0.30 -48.53 15 14 Si 0.96 42.90 24.52 68.60 1.68 44.58 15 15 H -0.24 -9.58 6.69 99.48 0.67 -8.92 15 16 H -0.27 -11.07 7.11 99.48 0.71 -10.37 15 17 H -0.26 -12.25 6.54 99.48 0.65 -11.60 15 18 C 0.10 5.35 7.92 134.28 1.06 6.41 15 19 N -0.47 -23.13 10.37 -179.14 -1.86 -24.98 15 20 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.11 1.75 8.09 -2.39 -0.02 1.73 15 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.20 3.33 8.06 -2.91 -0.02 3.31 15 24 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.07 1.73 8.10 -2.39 -0.02 1.72 15 26 H 0.13 1.76 8.09 -2.39 -0.02 1.74 15 27 H 0.19 8.60 4.21 -2.91 -0.01 8.59 15 28 H 0.29 14.92 8.30 -92.71 -0.77 14.15 15 Total: -1.00 -75.61 244.17 4.48 -71.13 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.08 Total: 9.03 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.66 Total: -19.57 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -2.94 Total: -105.16 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.68 Total: 44.58 kcal Total: -75.61 4.48 -71.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211039.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.528 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds