Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40336 * 119.85435 * 2 1 4 4 C 1.35556 * 119.48365 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.40526 * 179.97438 * 4 3 2 6 6 N 1.36532 * 119.18253 * 359.97438 * 4 3 2 7 7 N 1.39979 * 132.15218 * 180.33022 * 6 4 3 8 8 C 1.33216 * 108.61358 * 180.02562 * 7 6 4 9 9 C 1.41525 * 125.83810 * 179.87450 * 8 7 6 10 10 H 1.08000 * 119.99776 * 185.99571 * 9 8 7 11 11 C 1.39885 * 119.99745 * 6.00125 * 9 8 7 12 12 N 1.30847 * 120.00230 * 183.08438 * 11 9 8 13 13 Si 1.86807 * 120.00313 * 2.81148 * 11 9 8 14 14 H 1.48494 * 109.47363 * 180.27273 * 13 11 9 15 15 H 1.48501 * 109.46871 * 300.27700 * 13 11 9 16 16 H 1.48501 * 109.46927 * 60.27305 * 13 11 9 17 17 C 1.40924 * 108.32278 * 359.61623 * 8 7 6 18 18 C 1.37451 * 119.74759 * 359.97438 * 6 4 3 19 19 N 1.31140 * 119.84889 * 179.97438 * 2 1 3 20 20 H 1.09004 * 109.47837 * 270.02989 * 1 2 3 21 21 H 1.09001 * 109.46780 * 30.02756 * 1 2 3 22 22 H 1.09000 * 109.47473 * 150.01987 * 1 2 3 23 23 H 1.07999 * 120.26173 * 0.02562 * 3 2 1 24 24 H 1.08995 * 109.46880 * 89.99872 * 5 4 3 25 25 H 1.09002 * 109.46777 * 210.00039 * 5 4 3 26 26 H 1.09001 * 109.46583 * 329.99405 * 5 4 3 27 27 H 0.97006 * 119.99784 * 354.47879 * 12 11 9 28 28 H 1.08003 * 126.21529 * 180.21865 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.2171 0.0000 4 6 3.5611 1.2084 0.0005 5 6 4.3322 2.5032 0.0000 6 7 4.2191 0.0121 0.0016 7 7 5.5811 -0.3109 0.0083 8 6 5.7035 -1.6374 0.0056 9 6 6.9221 -2.3571 0.0080 10 1 6.9144 -3.4324 -0.0922 11 6 8.1366 -1.6756 0.1403 12 7 9.2659 -2.3339 0.0821 13 14 8.1464 0.1753 0.3927 14 1 9.5484 0.6533 0.4967 15 1 7.4825 0.8355 -0.7600 16 1 7.4159 0.5084 1.6419 17 6 4.4121 -2.2016 0.0060 18 6 3.5021 -1.1606 0.0026 19 7 2.1597 -1.1374 0.0005 20 1 -0.3635 0.0005 1.0277 21 1 -0.3633 0.8898 -0.5143 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6675 2.1535 0.0004 24 1 4.5177 2.8160 1.0275 25 1 5.2830 2.3596 -0.5134 26 1 3.7536 3.2703 -0.5147 27 1 9.2606 -3.3024 0.0276 28 1 4.1762 -3.2555 0.0075 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261212851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = 83.190125 kcal Electronic energy + Delta-G solvation = -14065.381132 eV Core-core repulsion = 11696.269464 eV Total energy + Delta-G solvation = -2369.111668 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04899 -37.28480 -34.39472 -33.55422 -31.30067 -29.49710 -27.43338 -27.30438 -25.69915 -21.73775 -21.05959 -19.42022 -18.28349 -17.28506 -15.69957 -15.20164 -14.53339 -14.02373 -13.48477 -13.39927 -12.97930 -12.87420 -12.61354 -12.35104 -12.27243 -11.88036 -11.64236 -11.38689 -10.71650 -10.57713 -9.97395 -9.75254 -9.46332 -9.22166 -8.44832 -8.31458 -7.30839 -6.87059 -4.79532 1.38182 1.79853 3.03970 3.35088 3.54124 3.91155 3.95951 4.25652 4.30413 4.52711 4.69856 5.15589 5.24634 5.47188 5.51219 5.65777 5.68360 5.70279 5.91929 6.01276 6.10110 6.29796 6.57933 6.74905 6.99971 7.18212 7.48064 7.56292 8.12365 8.25587 8.55435 8.65137 9.02825 10.05338 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.010151 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.975880 B = 2757.729777 C = 3358.347667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.192 3.808 3 C -0.292 4.292 4 C 0.208 3.792 5 C -0.116 4.116 6 N -0.311 5.311 7 N -0.428 5.428 8 C 0.234 3.766 9 C -0.472 4.472 10 H 0.087 0.913 11 C 0.050 3.950 12 N -0.816 5.816 13 Si 1.104 2.896 14 H -0.305 1.305 15 H -0.263 1.263 16 H -0.279 1.279 17 C -0.297 4.297 18 C 0.250 3.750 19 N -0.497 5.497 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.145 0.855 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.284 0.716 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.203 8.392 0.154 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.027 3.973 3 C -0.318 4.318 4 C 0.085 3.915 5 C -0.173 4.173 6 N -0.078 5.078 7 N -0.268 5.268 8 C 0.093 3.907 9 C -0.510 4.510 10 H 0.105 0.895 11 C -0.171 4.171 12 N -0.440 5.440 13 Si 0.934 3.066 14 H -0.234 1.234 15 H -0.190 1.190 16 H -0.205 1.205 17 C -0.328 4.328 18 C 0.031 3.969 19 N -0.212 5.212 20 H 0.096 0.904 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.163 0.837 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.722 9.623 0.274 13.682 hybrid contribution -1.108 -1.636 -0.139 1.981 sum -10.831 7.987 0.134 13.458 Atomic orbital electron populations 1.20642 0.88604 1.03231 1.02934 1.21501 0.96710 0.88088 0.90980 1.20881 0.91682 0.99919 1.19342 1.20434 0.91685 0.86737 0.92675 1.20897 1.01021 0.91539 1.03813 1.47085 1.08226 1.04441 1.48074 1.77690 0.86071 1.14289 1.48716 1.19571 0.93592 0.89313 0.88249 1.20052 0.89148 0.95787 1.46028 0.89455 1.27372 0.90842 1.09552 0.89310 1.70637 1.28646 1.11614 1.33092 0.82835 0.72658 0.71364 0.79784 1.23423 1.18969 1.20549 1.20952 0.90199 0.96824 1.24844 1.20430 0.87209 0.87503 1.01734 1.68006 1.04985 1.28536 1.19648 0.90366 0.90666 0.90571 0.83700 0.89745 0.89609 0.89789 0.90438 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.19 36.00 0.37 -0.75 15 2 C 0.19 3.28 6.83 -82.10 -0.56 2.72 15 3 C -0.29 -4.65 9.37 -39.75 -0.37 -5.03 15 4 C 0.21 3.94 6.86 -81.46 -0.56 3.38 15 5 C -0.12 -1.71 10.09 36.01 0.36 -1.35 15 6 N -0.31 -7.48 3.89 -8.49 -0.03 -7.51 15 7 N -0.43 -11.44 7.71 32.16 0.25 -11.19 15 8 C 0.23 6.46 6.48 -85.00 -0.55 5.91 15 9 C -0.47 -13.29 9.83 -37.71 -0.37 -13.67 15 10 H 0.09 2.44 8.05 -52.49 -0.42 2.02 15 11 C 0.05 1.38 5.52 -17.35 -0.10 1.29 15 12 N -0.82 -22.54 13.65 55.54 0.76 -21.79 15 13 Si 1.10 27.23 25.83 -169.99 -4.39 22.84 15 14 H -0.30 -7.24 7.11 56.52 0.40 -6.84 15 15 H -0.26 -6.45 6.79 56.52 0.38 -6.07 15 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 17 C -0.30 -7.70 10.87 -38.56 -0.42 -8.12 15 18 C 0.25 6.15 7.89 -155.22 -1.22 4.92 15 19 N -0.50 -10.69 10.41 -8.46 -0.09 -10.78 15 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 0.66 8.09 -51.93 -0.42 0.24 15 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.15 1.66 8.06 -52.49 -0.42 1.24 15 24 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 25 H 0.09 1.45 8.10 -51.93 -0.42 1.02 15 26 H 0.08 0.91 8.09 -51.93 -0.42 0.49 15 27 H 0.28 7.53 8.72 -40.82 -0.36 7.17 15 28 H 0.14 3.31 8.06 -52.48 -0.42 2.89 15 LS Contribution 248.01 15.07 3.74 3.74 Total: -1.00 -32.03 248.01 -6.16 -38.19 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -2.97 Total: -2.81 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.42 Total: -10.69 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.89 Total: -51.26 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: -4.39 Total: 22.84 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.03 -6.16 -38.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261212851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.378 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds