Wall clock time and date at job start Mon Mar 30 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46871 * 2 1 4 4 C 1.50704 * 109.47136 * 119.99641 * 2 1 3 5 5 H 1.07992 * 119.99610 * 120.00201 * 4 2 1 6 6 C 1.37878 * 119.99903 * 300.00505 * 4 2 1 7 7 N 1.31504 * 120.00288 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99510 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47051 * 89.99962 * 8 6 4 10 10 H 1.48496 * 109.46844 * 209.99596 * 8 6 4 11 11 H 1.48500 * 109.47185 * 329.99797 * 8 6 4 12 12 C 1.50694 * 109.47106 * 240.00218 * 2 1 3 13 13 C 1.40567 * 119.76504 * 299.99518 * 12 2 1 14 14 C 1.36025 * 119.69571 * 179.97438 * 13 12 2 15 15 C 1.40773 * 119.14452 * 0.02562 * 14 13 12 16 16 C 1.38442 * 133.92437 * 179.97438 * 15 14 13 17 17 N 1.32507 * 108.33978 * 180.02562 * 16 15 14 18 18 N 1.28733 * 110.65384 * 0.02562 * 17 16 15 19 19 N 1.37415 * 119.90305 * 0.02562 * 15 14 13 20 20 C 1.34938 * 119.76831 * 120.20391 * 12 2 1 21 21 H 1.08997 * 109.47302 * 299.99807 * 1 2 3 22 22 H 1.09003 * 109.47265 * 60.00090 * 1 2 3 23 23 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00026 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.15105 * 0.02562 * 13 12 2 26 26 H 1.07993 * 120.43245 * 179.97438 * 14 13 12 27 27 H 1.08001 * 125.82983 * 0.02562 * 16 15 14 28 28 H 1.08003 * 119.73466 * 359.81013 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4858 -2.5661 3.7120 12 6 2.0323 -0.7103 -1.2304 13 6 1.6898 -2.0562 -1.4480 14 6 2.1435 -2.6958 -2.5594 15 6 2.9515 -1.9930 -3.4731 16 6 3.5648 -2.3281 -4.6682 17 7 4.2155 -1.2641 -5.1156 18 7 4.0729 -0.2718 -4.3080 19 7 3.2714 -0.6781 -3.2343 20 6 2.8112 -0.0512 -2.1135 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1618 3.4844 25 1 1.0685 -2.5796 -0.7364 26 1 1.8880 -3.7298 -2.7381 27 1 3.5204 -3.2921 -5.1530 28 1 3.0674 0.9826 -1.9345 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:28 Heat of formation + Delta-G solvation = 110.186627 kcal Electronic energy + Delta-G solvation = -13883.790167 eV Core-core repulsion = 11515.849155 eV Total energy + Delta-G solvation = -2367.941012 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11921 -38.10832 -34.52933 -32.87559 -31.78656 -29.30741 -28.33140 -25.36196 -23.61177 -23.35428 -21.70824 -20.30096 -17.53310 -16.64780 -16.13285 -15.63906 -15.39511 -14.69956 -14.37847 -13.65555 -12.93030 -12.32963 -12.23849 -11.95467 -11.59099 -11.12158 -11.06227 -11.00423 -10.88297 -10.57379 -10.50271 -10.30474 -9.90826 -9.40256 -8.78759 -8.58049 -7.52590 -6.22129 -4.31306 1.09107 1.25592 2.55882 2.89838 3.18593 3.26469 3.28415 3.71039 4.26762 4.58314 4.84622 5.04434 5.10553 5.22997 5.38756 5.40835 5.98107 6.00477 6.28474 6.43681 6.49354 6.64136 6.75289 6.82324 6.96188 7.18151 7.44022 7.63757 7.84038 8.09477 8.55046 8.70406 9.35464 10.83394 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049105 B = 0.007421 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.066644 B = 3771.955177 C = 3865.510612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.043 0.957 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 C -0.042 4.042 13 C -0.051 4.051 14 C -0.119 4.119 15 C 0.062 3.938 16 C -0.092 4.092 17 N -0.232 5.232 18 N -0.140 5.140 19 N -0.265 5.265 20 C 0.059 3.941 21 H 0.091 0.909 22 H 0.012 0.988 23 H 0.032 0.968 24 H 0.264 0.736 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.184 0.816 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -5.745 -5.774 8.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.061 3.939 3 H 0.061 0.939 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.047 4.047 13 C -0.075 4.075 14 C -0.140 4.140 15 C -0.064 4.064 16 C -0.261 4.261 17 N -0.089 5.089 18 N -0.113 5.113 19 N -0.034 5.034 20 C -0.067 4.067 21 H 0.110 0.890 22 H 0.031 0.969 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.167 0.833 26 H 0.166 0.834 27 H 0.201 0.799 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.178 -4.318 -6.488 7.795 hybrid contribution -0.235 -1.219 1.440 1.901 sum -0.057 -5.536 -5.048 7.492 Atomic orbital electron populations 1.21817 0.96773 0.99737 1.00893 1.17908 0.93345 0.95630 0.87028 0.93908 1.20989 1.32134 1.12958 0.89518 0.92219 1.24929 0.94696 0.94889 0.99055 1.69857 1.35963 1.22551 1.23920 0.86523 0.78709 0.80072 0.82347 1.20540 1.21062 1.19758 1.20669 0.93429 0.94320 0.96235 1.21436 0.96449 0.94183 0.95417 1.20580 0.98932 1.00649 0.93837 1.20310 1.01490 0.86247 0.98383 1.22979 1.06611 1.00168 0.96302 1.73548 1.15225 0.98638 1.21443 1.82183 1.17537 1.17495 0.94121 1.48071 1.30019 1.09230 1.16124 1.21615 1.00167 1.00005 0.84864 0.89039 0.96915 0.94895 0.92587 0.83314 0.83416 0.79865 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.78 37.16 0.33 -2.48 15 2 C 0.08 1.74 2.46 -92.92 -0.23 1.51 15 3 H 0.04 1.00 7.81 -51.93 -0.41 0.59 15 4 C -0.52 -12.53 8.25 -34.44 -0.28 -12.82 15 5 H 0.06 1.44 7.60 -52.49 -0.40 1.04 15 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -23.00 11.32 55.43 0.63 -22.38 15 8 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 15 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 11 H -0.27 -5.89 7.11 56.52 0.40 -5.48 15 12 C -0.04 -0.78 4.69 -104.92 -0.49 -1.27 15 13 C -0.05 -0.83 8.74 -39.50 -0.35 -1.18 15 14 C -0.12 -1.71 10.11 -39.42 -0.40 -2.11 15 15 C 0.06 1.03 6.88 -84.33 -0.58 0.45 15 16 C -0.09 -1.46 12.02 -17.19 -0.21 -1.67 15 17 N -0.23 -4.33 12.24 30.62 0.37 -3.96 15 18 N -0.14 -2.80 13.86 60.35 0.84 -1.97 15 19 N -0.27 -4.98 3.95 -10.79 -0.04 -5.03 15 20 C 0.06 1.08 10.82 -16.68 -0.18 0.90 15 21 H 0.09 2.15 6.07 -51.93 -0.32 1.84 15 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 23 H 0.03 0.64 7.40 -51.93 -0.38 0.25 15 24 H 0.26 6.60 8.31 -40.82 -0.34 6.26 15 25 H 0.15 2.27 7.61 -52.49 -0.40 1.87 15 26 H 0.15 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.18 2.12 8.06 -52.49 -0.42 1.69 15 28 H 0.17 2.85 7.87 -52.48 -0.41 2.44 15 LS Contribution 247.22 15.07 3.73 3.73 Total: -1.00 -27.59 247.22 -4.70 -32.29 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -2.72 Total: -0.19 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -2.48 Total: -17.09 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 1.80 Total: -33.33 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.59 -4.70 -32.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.475 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds