Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46871 * 2 1 4 4 C 1.50704 * 109.47136 * 119.99641 * 2 1 3 5 5 H 1.07992 * 119.99610 * 120.00201 * 4 2 1 6 6 C 1.37878 * 119.99903 * 300.00505 * 4 2 1 7 7 N 1.31504 * 120.00288 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99510 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47051 * 89.99962 * 8 6 4 10 10 H 1.48496 * 109.46844 * 209.99596 * 8 6 4 11 11 H 1.48500 * 109.47185 * 329.99797 * 8 6 4 12 12 C 1.50694 * 109.47106 * 240.00218 * 2 1 3 13 13 C 1.40567 * 119.76504 * 299.99518 * 12 2 1 14 14 C 1.36025 * 119.69571 * 179.97438 * 13 12 2 15 15 C 1.40773 * 119.14452 * 0.02562 * 14 13 12 16 16 C 1.38442 * 133.92437 * 179.97438 * 15 14 13 17 17 N 1.32507 * 108.33978 * 180.02562 * 16 15 14 18 18 N 1.28733 * 110.65384 * 0.02562 * 17 16 15 19 19 N 1.37415 * 119.90305 * 0.02562 * 15 14 13 20 20 C 1.34938 * 119.76831 * 120.20391 * 12 2 1 21 21 H 1.08997 * 109.47302 * 299.99807 * 1 2 3 22 22 H 1.09003 * 109.47265 * 60.00090 * 1 2 3 23 23 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00026 * 180.02562 * 7 6 4 25 25 H 1.07998 * 120.15105 * 0.02562 * 13 12 2 26 26 H 1.07993 * 120.43245 * 179.97438 * 14 13 12 27 27 H 1.08001 * 125.82983 * 0.02562 * 16 15 14 28 28 H 1.08003 * 119.73466 * 359.81013 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4858 -2.5661 3.7120 12 6 2.0323 -0.7103 -1.2304 13 6 1.6898 -2.0562 -1.4480 14 6 2.1435 -2.6958 -2.5594 15 6 2.9515 -1.9930 -3.4731 16 6 3.5648 -2.3281 -4.6682 17 7 4.2155 -1.2641 -5.1156 18 7 4.0729 -0.2718 -4.3080 19 7 3.2714 -0.6781 -3.2343 20 6 2.8112 -0.0512 -2.1135 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1618 3.4844 25 1 1.0685 -2.5796 -0.7364 26 1 1.8880 -3.7298 -2.7381 27 1 3.5204 -3.2921 -5.1530 28 1 3.0674 0.9826 -1.9345 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = 94.416560 kcal Electronic energy + Delta-G solvation = -13884.474009 eV Core-core repulsion = 11515.849155 eV Total energy + Delta-G solvation = -2368.624854 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.45542 -39.50786 -36.19618 -34.19132 -33.47056 -30.76622 -29.75385 -27.20902 -25.07884 -24.68630 -23.01822 -21.92729 -19.00748 -18.01609 -17.81976 -17.03117 -16.94571 -16.19805 -15.67644 -15.03887 -14.63967 -13.85941 -13.70996 -13.34448 -13.25522 -12.82282 -12.72118 -12.42573 -12.28000 -12.21766 -12.02929 -11.75129 -11.59820 -11.11886 -10.48023 -10.27088 -8.87005 -8.10986 -6.25160 -0.17925 -0.11570 1.21387 1.45114 1.48610 1.55799 1.58878 2.37079 2.49175 3.18731 3.30088 3.60226 3.74306 3.98412 4.09765 4.23542 4.55395 4.71512 4.90442 5.00519 5.13243 5.18963 5.25665 5.29476 5.50941 5.62971 5.75604 5.89399 6.05699 6.27578 6.82630 7.21079 7.44054 8.93473 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049105 B = 0.007421 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.066644 B = 3771.955177 C = 3865.510612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.080 3.920 3 H 0.015 0.985 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.951 3.049 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.263 1.263 12 C -0.044 4.044 13 C -0.067 4.067 14 C -0.085 4.085 15 C 0.047 3.953 16 C -0.072 4.072 17 N -0.256 5.256 18 N -0.182 5.182 19 N -0.273 5.273 20 C 0.044 3.956 21 H 0.063 0.937 22 H 0.026 0.974 23 H 0.046 0.954 24 H 0.263 0.737 25 H 0.162 0.838 26 H 0.199 0.801 27 H 0.230 0.770 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -8.375 -6.380 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.061 3.939 3 H 0.033 0.967 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.777 3.223 9 H -0.210 1.210 10 H -0.211 1.211 11 H -0.187 1.187 12 C -0.049 4.049 13 C -0.091 4.091 14 C -0.105 4.105 15 C -0.079 4.079 16 C -0.242 4.242 17 N -0.111 5.111 18 N -0.154 5.154 19 N -0.043 5.043 20 C -0.081 4.081 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.179 0.821 26 H 0.216 0.784 27 H 0.247 0.753 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.013 -6.938 -7.116 9.938 hybrid contribution -0.178 -0.460 1.559 1.635 sum -0.166 -7.398 -5.557 9.254 Atomic orbital electron populations 1.21661 0.96170 1.00336 1.00147 1.17739 0.93876 0.94323 0.87994 0.96693 1.21285 1.31533 1.12801 0.90469 0.92178 1.25609 0.95066 0.95549 1.01608 1.69984 1.37204 1.23826 1.24209 0.85657 0.77731 0.79505 0.79390 1.21006 1.21138 1.18727 1.20383 0.93852 0.95562 0.95073 1.21541 0.97624 0.93105 0.96852 1.21077 0.95765 1.02237 0.91463 1.20951 1.02013 0.85657 0.99293 1.23816 1.04027 1.00920 0.95405 1.73550 1.16321 0.99445 1.21764 1.82181 1.19448 1.18583 0.95206 1.48144 1.30014 1.10240 1.15883 1.21538 1.00915 1.00321 0.85369 0.91856 0.95500 0.93523 0.92821 0.82083 0.78358 0.75346 0.81564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.78 71.98 0.63 -4.58 15 2 C 0.08 3.50 2.46 -12.29 -0.03 3.47 15 3 H 0.01 0.73 7.81 -2.39 -0.02 0.71 15 4 C -0.52 -25.17 8.25 25.60 0.21 -24.96 15 5 H 0.06 2.83 7.60 -2.91 -0.02 2.81 15 6 C 0.02 1.07 5.30 84.66 0.45 1.52 15 7 N -0.91 -48.22 11.32 21.45 0.24 -47.98 15 8 Si 0.95 39.94 29.54 68.60 2.03 41.97 15 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 10 H -0.29 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 12 C -0.04 -1.61 4.69 -20.06 -0.09 -1.70 15 13 C -0.07 -2.00 8.74 22.32 0.20 -1.81 15 14 C -0.08 -2.06 10.11 22.38 0.23 -1.83 15 15 C 0.05 1.42 6.88 38.94 0.27 1.69 15 16 C -0.07 -2.02 12.02 84.64 1.02 -1.00 15 17 N -0.26 -9.17 12.24 -57.05 -0.70 -9.87 15 18 N -0.18 -7.22 13.86 37.02 0.51 -6.71 15 19 N -0.27 -10.02 3.95 -188.05 -0.74 -10.76 15 20 C 0.04 1.62 10.82 83.22 0.90 2.52 15 21 H 0.06 3.01 6.07 -2.39 -0.01 3.00 15 22 H 0.03 0.99 8.14 -2.39 -0.02 0.98 15 23 H 0.05 1.76 7.40 -2.39 -0.02 1.74 15 24 H 0.26 13.33 8.31 -92.71 -0.77 12.56 15 25 H 0.16 4.38 7.61 -2.91 -0.02 4.36 15 26 H 0.20 2.78 8.06 -2.91 -0.02 2.76 15 27 H 0.23 4.00 8.06 -2.91 -0.02 3.97 15 28 H 0.17 5.91 7.87 -2.91 -0.02 5.89 15 Total: -1.00 -59.93 247.22 6.28 -53.64 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.17 Total: 6.39 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.78 Total: -26.69 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -0.69 Total: -75.31 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -59.93 6.28 -53.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.061 kcal (2) G-P(sol) polarization free energy of solvation -59.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds