Wall clock time and date at job start Mon Mar 30 2020 02:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48497 * 109.47340 * 240.00454 * 3 2 1 5 5 H 1.48501 * 109.47042 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47285 * 120.00033 * 3 2 1 7 7 C 1.37875 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46824 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46822 * 180.02562 * 10 9 7 12 12 C 1.35188 * 119.71742 * 85.01822 * 11 10 9 13 13 C 1.40275 * 120.21081 * 179.73016 * 12 11 10 14 14 C 1.36181 * 119.62291 * 0.50078 * 13 12 11 15 15 C 1.40657 * 119.26678 * 359.50419 * 14 13 12 16 16 N 1.32842 * 132.88788 * 180.27814 * 15 14 13 17 17 C 1.32520 * 109.67935 * 179.97438 * 16 15 14 18 18 N 1.31253 * 109.63377 * 0.02562 * 17 16 15 19 19 N 1.35928 * 119.71030 * 264.99781 * 11 10 9 20 20 H 0.97009 * 119.99914 * 359.97438 * 1 2 3 21 21 H 1.08988 * 109.47442 * 60.00071 * 9 7 2 22 22 H 1.09000 * 109.46704 * 299.99201 * 9 7 2 23 23 H 1.09001 * 109.47559 * 59.99818 * 10 9 7 24 24 H 1.08998 * 109.47270 * 299.99443 * 10 9 7 25 25 H 1.07994 * 119.89034 * 0.02562 * 12 11 10 26 26 H 1.07998 * 120.18656 * 180.28221 * 13 12 11 27 27 H 1.08002 * 120.36941 * 179.78426 * 14 13 12 28 28 H 1.07998 * 125.17862 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 6 1.0686 -5.4962 -1.1711 13 6 0.3712 -6.7133 -1.1842 14 6 0.1136 -7.3542 -0.0106 15 6 0.5624 -6.7867 1.1957 16 7 0.4698 -7.1695 2.4644 17 6 1.0634 -6.2773 3.2441 18 7 1.5500 -5.3043 2.5099 19 7 1.2435 -5.6024 1.1747 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6247 -2.5570 0.8898 23 1 2.8719 -3.6043 0.8894 24 1 2.8718 -3.6044 -0.8905 25 1 1.2724 -4.9826 -2.0990 26 1 0.0375 -7.1378 -2.1195 27 1 -0.4254 -8.2901 -0.0064 28 1 1.1350 -6.3409 4.3198 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215481.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:02 Heat of formation + Delta-G solvation = 83.854383 kcal Electronic energy + Delta-G solvation = -13736.009326 eV Core-core repulsion = 11366.926462 eV Total energy + Delta-G solvation = -2369.082864 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.64836 -39.16320 -36.13309 -34.70565 -33.06659 -31.77595 -30.34322 -27.31608 -24.78734 -24.35163 -23.51819 -21.58841 -18.90426 -18.62373 -17.85402 -17.18275 -16.75555 -16.52485 -15.37443 -15.17643 -14.78357 -14.39492 -13.74300 -13.66622 -13.39484 -13.09233 -12.85539 -12.57333 -12.24087 -12.13780 -11.98087 -11.60392 -11.31462 -11.13241 -10.60708 -10.54447 -9.11653 -8.24229 -6.36755 -0.22410 0.02316 1.16994 1.39361 1.42658 1.50421 1.73015 2.37780 2.45621 3.02766 3.09592 3.24551 3.76360 3.91724 4.13412 4.21874 4.52415 4.55964 4.62127 4.92483 5.00298 5.14079 5.29631 5.37621 5.43130 5.43890 5.58079 5.74390 5.87378 6.13519 6.77977 6.92576 7.33141 8.87352 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.042505 B = 0.007137 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.588349 B = 3922.524694 C = 4274.509983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.045 3.955 10 C -0.065 4.065 11 C 0.129 3.871 12 C -0.155 4.155 13 C -0.028 4.028 14 C -0.132 4.132 15 C 0.256 3.744 16 N -0.579 5.579 17 C 0.227 3.773 18 N -0.385 5.385 19 N -0.293 5.293 20 H 0.264 0.736 21 H 0.009 0.991 22 H -0.029 1.029 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.185 0.815 26 H 0.203 0.797 27 H 0.185 0.815 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -13.535 -3.703 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.007 3.993 10 C -0.103 4.103 11 C 0.020 3.980 12 C -0.177 4.177 13 C -0.053 4.053 14 C -0.153 4.153 15 C 0.005 3.995 16 N -0.310 5.310 17 C -0.074 4.074 18 N -0.216 5.216 19 N -0.067 5.067 20 H 0.073 0.927 21 H 0.028 0.972 22 H -0.011 1.011 23 H 0.074 0.926 24 H 0.125 0.875 25 H 0.202 0.798 26 H 0.220 0.780 27 H 0.202 0.798 28 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.761 -13.120 -3.092 13.594 hybrid contribution 0.130 1.149 0.471 1.249 sum 1.890 -11.971 -2.621 12.399 Atomic orbital electron populations 1.70098 1.07933 1.27992 1.51271 1.25975 0.95719 1.03436 0.94423 0.85468 0.78246 0.77835 0.79317 1.18358 1.20896 1.19676 1.21573 0.93686 0.91803 1.51166 0.91669 1.18838 0.93632 0.92025 0.94782 1.20739 0.97689 0.88476 1.03430 1.20945 0.98964 0.95468 0.82646 1.21327 1.01473 0.98318 0.96571 1.21811 0.91868 0.91790 0.99868 1.20758 1.04362 1.03641 0.86556 1.22649 0.94802 0.85927 0.96107 1.70835 1.29973 1.31517 0.98722 1.26845 0.91419 0.86361 1.02725 1.78500 1.31556 1.26435 0.85141 1.47694 1.35834 1.16954 1.06221 0.92683 0.97221 1.01050 0.92564 0.87466 0.79784 0.77992 0.79800 0.72701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 15 2 C 0.00 0.15 5.46 84.65 0.46 0.61 15 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 15 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 7 C -0.54 -30.79 9.11 25.60 0.23 -30.56 15 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 15 9 C 0.04 2.36 4.96 29.85 0.15 2.51 15 10 C -0.07 -2.72 5.33 29.85 0.16 -2.56 15 11 C 0.13 4.66 6.06 41.22 0.25 4.91 15 12 C -0.15 -4.02 9.62 22.06 0.21 -3.80 15 13 C -0.03 -0.53 10.07 22.29 0.22 -0.31 15 14 C -0.13 -3.10 10.11 22.38 0.23 -2.88 15 15 C 0.26 8.77 7.88 134.10 1.06 9.82 15 16 N -0.58 -20.36 11.25 -198.18 -2.23 -22.59 15 17 C 0.23 7.72 12.98 180.83 2.35 10.07 15 18 N -0.39 -15.92 12.50 -61.37 -0.77 -16.69 15 19 N -0.29 -11.45 3.89 -181.16 -0.71 -12.16 15 20 H 0.26 15.20 8.31 -92.70 -0.77 14.43 15 21 H 0.01 0.51 8.14 -2.39 -0.02 0.49 15 22 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 15 23 H 0.06 2.52 7.98 -2.39 -0.02 2.50 15 24 H 0.11 3.81 8.10 -2.39 -0.02 3.79 15 25 H 0.18 3.76 8.06 -2.91 -0.02 3.74 15 26 H 0.20 1.62 8.06 -2.91 -0.02 1.59 15 27 H 0.18 3.01 8.06 -2.91 -0.02 2.99 15 28 H 0.26 6.01 8.06 -2.91 -0.02 5.99 15 Total: -1.00 -75.85 254.00 5.08 -70.77 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.16 Total: 3.52 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.32 Total: -12.18 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -3.42 Total: -108.15 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.85 5.08 -70.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215481.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.620 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds