Wall clock time and date at job start Mon Mar 30 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40561 * 119.76354 * 2 1 4 4 C 1.36033 * 119.68932 * 180.02562 * 3 2 1 5 5 C 1.40770 * 119.14578 * 359.94006 * 4 3 2 6 6 C 1.38436 * 133.91826 * 180.02562 * 5 4 3 7 7 C 1.50700 * 125.83361 * 359.96914 * 6 5 4 8 8 C 1.50702 * 109.46869 * 90.00310 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 N 1.32503 * 108.33650 * 180.23975 * 6 5 4 17 17 N 1.28733 * 110.65485 * 359.58123 * 16 6 5 18 18 N 1.37415 * 119.90818 * 0.06250 * 5 4 3 19 19 C 1.34937 * 119.76291 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47115 * 269.97491 * 1 2 3 21 21 H 1.08998 * 109.47520 * 29.97179 * 1 2 3 22 22 H 1.09001 * 109.47401 * 149.97987 * 1 2 3 23 23 H 1.07995 * 120.15695 * 0.06376 * 3 2 1 24 24 H 1.08002 * 120.42373 * 180.02562 * 4 3 2 25 25 H 1.09004 * 109.47210 * 330.00604 * 7 6 5 26 26 H 1.08994 * 109.47551 * 210.00256 * 7 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 1.07995 * 119.74047 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2202 0.0000 4 6 3.5651 1.2184 -0.0005 5 6 4.2491 -0.0119 0.0002 6 6 5.5873 -0.3666 0.0004 7 6 6.7531 0.5883 -0.0008 8 6 7.1419 0.9081 1.4196 9 1 6.5994 0.4639 2.2411 10 6 8.1944 1.7628 1.6705 11 7 8.8553 2.3034 0.6702 12 14 8.6812 2.1532 3.4312 13 1 9.0635 0.8991 4.1287 14 1 9.8331 3.0904 3.4300 15 1 7.5338 2.7808 4.1346 16 7 5.6679 -1.6892 -0.0040 17 7 4.4933 -2.2158 0.0017 18 7 3.5410 -1.1896 0.0002 19 6 2.1769 -1.1714 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6635 2.1547 0.0010 24 1 4.1133 2.1490 -0.0001 25 1 6.4702 1.5065 -0.5155 26 1 7.5981 0.1295 -0.5142 27 1 9.5955 2.9050 0.8467 28 1 1.6288 -2.1019 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:24 Heat of formation + Delta-G solvation = 86.086333 kcal Electronic energy + Delta-G solvation = -13743.642715 eV Core-core repulsion = 11374.656636 eV Total energy + Delta-G solvation = -2368.986079 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.47271 -39.28907 -35.70823 -34.27195 -33.80440 -31.83262 -28.83247 -27.99604 -25.32525 -24.61807 -23.41416 -21.84798 -18.67913 -18.52351 -17.85927 -17.01143 -16.64085 -16.04987 -15.65844 -14.70188 -14.55743 -14.19701 -13.78208 -13.45891 -13.22669 -13.02564 -12.86322 -12.69476 -12.54662 -12.31163 -11.98314 -11.91735 -11.72281 -11.33507 -10.59659 -10.32880 -8.74912 -8.16981 -6.32372 -0.22636 -0.17447 1.28197 1.39409 1.43512 1.50593 1.59291 2.31211 2.44211 3.10699 3.23177 3.59694 3.77204 3.85148 3.93187 4.14736 4.40382 4.65719 4.77528 4.93181 5.08167 5.17438 5.24873 5.27834 5.37228 5.47029 5.56890 5.70997 5.86373 6.15382 6.74400 7.29798 7.35236 8.89939 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.038793 B = 0.007775 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.607409 B = 3600.650990 C = 3918.979429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.082 4.082 3 C -0.074 4.074 4 C -0.091 4.091 5 C 0.044 3.956 6 C -0.022 4.022 7 C 0.110 3.890 8 C -0.529 4.529 9 H 0.042 0.958 10 C 0.013 3.987 11 N -0.924 5.924 12 Si 0.965 3.035 13 H -0.278 1.278 14 H -0.275 1.275 15 H -0.262 1.262 16 N -0.266 5.266 17 N -0.174 5.174 18 N -0.278 5.278 19 C 0.054 3.946 20 H 0.093 0.907 21 H 0.098 0.902 22 H 0.086 0.914 23 H 0.190 0.810 24 H 0.158 0.842 25 H 0.032 0.968 26 H 0.004 0.996 27 H 0.268 0.732 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.190 1.064 -0.904 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.088 4.088 3 C -0.097 4.097 4 C -0.112 4.112 5 C -0.081 4.081 6 C -0.172 4.172 7 C 0.071 3.929 8 C -0.567 4.567 9 H 0.061 0.939 10 C -0.186 4.186 11 N -0.563 5.563 12 Si 0.789 3.211 13 H -0.204 1.204 14 H -0.199 1.199 15 H -0.187 1.187 16 N -0.121 5.121 17 N -0.145 5.145 18 N -0.049 5.049 19 C -0.071 4.071 20 H 0.111 0.889 21 H 0.117 0.883 22 H 0.105 0.895 23 H 0.208 0.792 24 H 0.176 0.824 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.636 -0.651 -0.964 19.671 hybrid contribution 0.892 0.840 0.691 1.407 sum -18.744 0.189 -0.273 18.747 Atomic orbital electron populations 1.20857 0.84739 1.05476 1.04544 1.20300 0.99712 0.90318 0.98434 1.21714 0.92077 1.00350 0.95608 1.20970 0.95683 0.94639 0.99934 1.20301 0.92333 0.89468 1.05994 1.22451 0.94750 0.90403 1.09558 1.17353 0.88006 0.90589 0.96933 1.21165 1.16138 1.27562 0.91871 0.93939 1.25811 0.95602 0.95369 1.01788 1.70047 1.21806 1.31565 1.32907 0.85518 0.78283 0.78027 0.79308 1.20368 1.19946 1.18701 1.73485 1.16312 1.10235 1.12073 1.81929 0.89317 1.07530 1.35703 1.48164 1.07975 1.07059 1.41702 1.22158 0.77735 1.03069 1.04168 0.88888 0.88348 0.89480 0.79245 0.82431 0.95012 0.97811 0.92280 0.78677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.99 71.24 0.71 -0.01 15 2 C -0.08 -1.47 5.85 -20.06 -0.12 -1.59 15 3 C -0.07 -1.48 9.74 22.32 0.22 -1.26 15 4 C -0.09 -2.83 10.10 22.38 0.23 -2.61 15 5 C 0.04 1.83 6.81 38.93 0.27 2.09 15 6 C -0.02 -1.11 6.41 42.50 0.27 -0.84 15 7 C 0.11 6.27 5.52 29.10 0.16 6.43 15 8 C -0.53 -31.49 9.09 25.60 0.23 -31.26 15 9 H 0.04 2.56 7.74 -2.91 -0.02 2.54 15 10 C 0.01 0.77 5.46 84.66 0.46 1.23 15 11 N -0.92 -55.55 13.29 21.45 0.28 -55.26 15 12 Si 0.96 44.92 29.54 68.60 2.03 46.95 15 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 14 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 15 H -0.26 -11.54 7.11 99.48 0.71 -10.84 15 16 N -0.27 -14.10 12.24 -47.45 -0.58 -14.68 15 17 N -0.17 -8.10 13.86 37.02 0.51 -7.59 15 18 N -0.28 -10.66 3.95 -188.06 -0.74 -11.40 15 19 C 0.05 1.35 10.82 83.22 0.90 2.25 15 20 H 0.09 0.51 8.14 -2.39 -0.02 0.49 15 21 H 0.10 0.38 8.09 -2.39 -0.02 0.36 15 22 H 0.09 0.44 8.07 -2.39 -0.02 0.42 15 23 H 0.19 1.98 8.06 -2.91 -0.02 1.96 15 24 H 0.16 4.80 8.06 -2.91 -0.02 4.78 15 25 H 0.03 1.77 8.14 -2.38 -0.02 1.75 15 26 H 0.00 0.22 8.14 -2.39 -0.02 0.20 15 27 H 0.27 15.05 8.31 -92.70 -0.77 14.28 15 28 H 0.20 3.48 8.06 -2.91 -0.02 3.45 15 Total: -1.00 -77.90 254.79 5.99 -71.91 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: 1.16 Total: -4.36 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.33 Total: -25.56 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -0.53 Total: -88.94 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -77.90 5.99 -71.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.999 kcal (2) G-P(sol) polarization free energy of solvation -77.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds