Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46945 * 2 1 4 4 C 1.50696 * 109.47322 * 120.00384 * 2 1 3 5 5 H 1.07998 * 119.99832 * 85.06056 * 4 2 1 6 6 C 1.37873 * 120.00224 * 265.06160 * 4 2 1 7 7 N 1.31516 * 120.00399 * 176.30493 * 6 4 2 8 8 Si 1.86807 * 119.99742 * 356.30361 * 6 4 2 9 9 H 1.48504 * 109.46902 * 274.93262 * 8 6 4 10 10 H 1.48495 * 109.46792 * 34.93407 * 8 6 4 11 11 H 1.48501 * 109.47183 * 154.93391 * 8 6 4 12 12 C 1.50704 * 109.46977 * 240.00423 * 2 1 3 13 13 C 1.40564 * 120.15356 * 299.72424 * 12 2 1 14 14 C 1.34934 * 120.46877 * 179.66193 * 13 12 2 15 15 N 1.36424 * 120.52495 * 0.66208 * 14 13 12 16 16 N 1.40012 * 133.61620 * 179.68260 * 15 14 13 17 17 N 1.28742 * 108.70834 * 179.97438 * 16 15 14 18 18 C 1.32501 * 110.65468 * 359.97438 * 17 16 15 19 19 C 1.37414 * 120.25793 * 359.61625 * 15 14 13 20 20 C 1.36031 * 120.15145 * 119.99773 * 12 2 1 21 21 H 1.08993 * 109.47129 * 64.28398 * 1 2 3 22 22 H 1.09003 * 109.46746 * 184.28488 * 1 2 3 23 23 H 1.08999 * 109.46799 * 304.27861 * 1 2 3 24 24 H 0.96997 * 120.00206 * 180.02562 * 7 6 4 25 25 H 1.07999 * 119.76160 * 359.97438 * 13 12 2 26 26 H 1.08003 * 119.73507 * 180.27738 * 14 13 12 27 27 H 1.07995 * 125.82932 * 180.02562 * 18 17 16 28 28 H 1.07997 * 120.42895 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.1365 -1.7854 1.2285 6 6 2.3591 0.0118 2.3584 7 7 2.7280 -0.6129 3.4554 8 14 2.2778 1.8779 2.3287 9 1 3.5502 2.4201 1.7880 10 1 1.1491 2.3104 1.4662 11 1 2.0697 2.3863 3.7083 12 6 2.0323 -0.7103 -1.2306 13 6 1.6995 -2.0577 -1.4534 14 6 2.1401 -2.6979 -2.5564 15 7 2.9262 -2.0518 -3.4651 16 7 3.5271 -2.4374 -4.6695 17 7 4.1757 -1.4332 -5.1474 18 6 4.0603 -0.3804 -4.3511 19 6 3.2719 -0.7362 -3.2701 20 6 2.8145 -0.0521 -2.1280 21 1 -0.3633 0.4459 -0.9258 22 1 -0.3633 -1.0248 0.0768 23 1 -0.3633 0.5788 0.8492 24 1 2.9575 -0.1048 4.2491 25 1 1.0825 -2.5827 -0.7391 26 1 1.8735 -3.7320 -2.7180 27 1 4.5050 0.5896 -4.5172 28 1 3.0808 0.9820 -1.9666 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222789.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = 110.859048 kcal Electronic energy + Delta-G solvation = -13911.173155 eV Core-core repulsion = 11543.261301 eV Total energy + Delta-G solvation = -2367.911854 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.16098 -38.16352 -34.84839 -32.58512 -31.59794 -30.33096 -28.37350 -25.42187 -23.77276 -23.38090 -21.81873 -20.03783 -17.70848 -17.15668 -16.07889 -15.72829 -15.40254 -14.68901 -14.23612 -13.88256 -12.89319 -12.68565 -12.41069 -12.27838 -11.82572 -11.51616 -11.33218 -11.11630 -10.91722 -10.79943 -10.32146 -10.01146 -9.94753 -9.40893 -9.09749 -8.76551 -7.53491 -6.29559 -4.31968 1.05846 1.19155 2.47901 2.85304 3.14283 3.22558 3.24581 3.68012 4.22220 4.48615 4.84425 4.92937 5.02552 5.16583 5.39605 5.43646 5.78379 5.90804 6.12888 6.16867 6.35575 6.41669 6.46740 6.64976 6.71990 6.92028 7.04137 7.16654 7.45829 8.23379 8.50631 8.71750 9.30041 10.82566 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044016 B = 0.008222 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.973103 B = 3404.791470 C = 3580.074585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.039 3.961 3 H 0.047 0.953 4 C -0.516 4.516 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.262 1.262 11 H -0.286 1.286 12 C 0.014 3.986 13 C -0.105 4.105 14 C 0.076 3.924 15 N -0.282 5.282 16 N -0.144 5.144 17 N -0.225 5.225 18 C -0.097 4.097 19 C 0.087 3.913 20 C -0.132 4.132 21 H 0.026 0.974 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.268 0.732 25 H 0.162 0.838 26 H 0.169 0.831 27 H 0.186 0.814 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 1.613 -7.980 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.065 0.935 4 C -0.553 4.553 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.700 3.300 9 H -0.199 1.199 10 H -0.186 1.186 11 H -0.213 1.213 12 C 0.008 3.992 13 C -0.128 4.128 14 C -0.050 4.050 15 N -0.053 5.053 16 N -0.117 5.117 17 N -0.083 5.083 18 C -0.265 4.265 19 C -0.039 4.039 20 C -0.154 4.154 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.179 0.821 26 H 0.186 0.814 27 H 0.203 0.797 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.472 0.349 -9.035 9.373 hybrid contribution -0.084 1.691 1.047 1.991 sum -2.555 2.040 -7.988 8.631 Atomic orbital electron populations 1.22032 0.97342 1.01033 0.99119 1.18414 0.93164 0.95914 0.90503 0.93521 1.20823 1.44951 0.95496 0.94042 0.90313 1.25028 0.93979 0.98488 0.95208 1.69869 1.44513 1.36183 1.02101 0.86908 0.79335 0.86056 0.77652 1.19866 1.18648 1.21250 1.20640 0.91066 0.93222 0.94279 1.21138 1.00684 0.95421 0.95537 1.21562 0.94984 0.99255 0.89176 1.47985 1.30836 1.09439 1.17007 1.82145 1.18076 1.17497 0.94005 1.73529 1.12458 0.98441 1.23827 1.22994 1.09222 1.00398 0.93883 1.20357 0.99596 0.85666 0.98251 1.20485 1.01571 1.01245 0.92078 0.95478 0.93051 0.92931 0.92233 0.82075 0.81354 0.79726 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.94 37.16 0.33 -2.12 15 2 C 0.04 0.78 2.12 -92.92 -0.20 0.58 15 3 H 0.05 0.94 5.07 -51.93 -0.26 0.67 15 4 C -0.52 -12.61 8.65 -34.44 -0.30 -12.91 15 5 H 0.08 2.08 7.66 -52.49 -0.40 1.68 15 6 C 0.08 1.99 5.47 -17.82 -0.10 1.89 15 7 N -0.89 -25.07 13.96 55.43 0.77 -24.30 15 8 Si 0.87 19.35 26.94 -169.99 -4.58 14.77 15 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 10 H -0.26 -5.42 6.78 56.52 0.38 -5.04 15 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 12 C 0.01 0.25 4.76 -104.54 -0.50 -0.25 15 13 C -0.11 -1.66 8.62 -39.88 -0.34 -2.00 15 14 C 0.08 1.14 11.21 -16.68 -0.19 0.95 15 15 N -0.28 -4.95 3.95 -10.79 -0.04 -5.00 15 16 N -0.14 -2.73 13.86 60.35 0.84 -1.89 15 17 N -0.22 -4.14 12.24 30.62 0.37 -3.77 15 18 C -0.10 -1.58 12.02 -17.19 -0.21 -1.79 15 19 C 0.09 1.48 6.88 -84.33 -0.58 0.90 15 20 C -0.13 -2.20 9.73 -39.42 -0.38 -2.59 15 21 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 15 22 H 0.05 0.86 7.59 -51.93 -0.39 0.47 15 23 H 0.05 0.97 8.04 -51.93 -0.42 0.55 15 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 25 H 0.16 2.32 7.62 -52.49 -0.40 1.92 15 26 H 0.17 1.94 8.06 -52.48 -0.42 1.51 15 27 H 0.19 2.30 8.06 -52.49 -0.42 1.88 15 28 H 0.15 2.14 7.94 -52.49 -0.42 1.73 15 LS Contribution 246.82 15.07 3.72 3.72 Total: -1.00 -29.20 246.82 -4.09 -33.29 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -2.72 Total: 0.51 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.46 Total: -17.34 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 1.94 Total: -34.95 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.58 Total: 14.77 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.20 -4.09 -33.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222789.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.151 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds