Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46945 * 2 1 4 4 C 1.50696 * 109.47322 * 120.00384 * 2 1 3 5 5 H 1.07998 * 119.99832 * 85.06056 * 4 2 1 6 6 C 1.37873 * 120.00224 * 265.06160 * 4 2 1 7 7 N 1.31516 * 120.00399 * 176.30493 * 6 4 2 8 8 Si 1.86807 * 119.99742 * 356.30361 * 6 4 2 9 9 H 1.48504 * 109.46902 * 274.93262 * 8 6 4 10 10 H 1.48495 * 109.46792 * 34.93407 * 8 6 4 11 11 H 1.48501 * 109.47183 * 154.93391 * 8 6 4 12 12 C 1.50704 * 109.46977 * 240.00423 * 2 1 3 13 13 C 1.40564 * 120.15356 * 299.72424 * 12 2 1 14 14 C 1.34934 * 120.46877 * 179.66193 * 13 12 2 15 15 N 1.36424 * 120.52495 * 0.66208 * 14 13 12 16 16 N 1.40012 * 133.61620 * 179.68260 * 15 14 13 17 17 N 1.28742 * 108.70834 * 179.97438 * 16 15 14 18 18 C 1.32501 * 110.65468 * 359.97438 * 17 16 15 19 19 C 1.37414 * 120.25793 * 359.61625 * 15 14 13 20 20 C 1.36031 * 120.15145 * 119.99773 * 12 2 1 21 21 H 1.08993 * 109.47129 * 64.28398 * 1 2 3 22 22 H 1.09003 * 109.46746 * 184.28488 * 1 2 3 23 23 H 1.08999 * 109.46799 * 304.27861 * 1 2 3 24 24 H 0.96997 * 120.00206 * 180.02562 * 7 6 4 25 25 H 1.07999 * 119.76160 * 359.97438 * 13 12 2 26 26 H 1.08003 * 119.73507 * 180.27738 * 14 13 12 27 27 H 1.07995 * 125.82932 * 180.02562 * 18 17 16 28 28 H 1.07997 * 120.42895 * 359.97438 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.1365 -1.7854 1.2285 6 6 2.3591 0.0118 2.3584 7 7 2.7280 -0.6129 3.4554 8 14 2.2778 1.8779 2.3287 9 1 3.5502 2.4201 1.7880 10 1 1.1491 2.3104 1.4662 11 1 2.0697 2.3863 3.7083 12 6 2.0323 -0.7103 -1.2306 13 6 1.6995 -2.0577 -1.4534 14 6 2.1401 -2.6979 -2.5564 15 7 2.9262 -2.0518 -3.4651 16 7 3.5271 -2.4374 -4.6695 17 7 4.1757 -1.4332 -5.1474 18 6 4.0603 -0.3804 -4.3511 19 6 3.2719 -0.7362 -3.2701 20 6 2.8145 -0.0521 -2.1280 21 1 -0.3633 0.4459 -0.9258 22 1 -0.3633 -1.0248 0.0768 23 1 -0.3633 0.5788 0.8492 24 1 2.9575 -0.1048 4.2491 25 1 1.0825 -2.5827 -0.7391 26 1 1.8735 -3.7320 -2.7180 27 1 4.5050 0.5896 -4.5172 28 1 3.0808 0.9820 -1.9666 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222789.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = 92.796687 kcal Electronic energy + Delta-G solvation = -13911.956398 eV Core-core repulsion = 11543.261301 eV Total energy + Delta-G solvation = -2368.695097 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.46625 -39.50626 -36.36345 -34.24695 -33.07469 -31.71876 -29.70470 -27.17348 -25.06317 -24.81224 -23.11850 -21.56403 -19.25620 -18.68870 -17.48196 -17.05550 -16.83077 -16.13746 -15.71583 -15.17184 -14.55705 -14.25194 -13.91941 -13.68964 -13.11518 -12.95122 -12.82360 -12.66080 -12.40466 -12.21693 -11.76582 -11.69574 -11.45770 -11.08722 -10.68694 -10.46778 -8.84078 -8.25639 -6.30808 -0.19191 -0.15168 1.22502 1.41567 1.44083 1.52501 1.56080 2.37462 2.39935 3.12050 3.26955 3.56265 3.73058 3.84217 4.15568 4.21474 4.43991 4.65200 4.76323 4.84839 4.93391 5.03198 5.22186 5.25984 5.37300 5.49774 5.62084 5.74319 5.80853 6.30427 6.76631 7.18555 7.34906 8.89992 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044016 B = 0.008222 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.973103 B = 3404.791470 C = 3580.074585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.039 3.961 3 H 0.051 0.949 4 C -0.507 4.507 5 H 0.046 0.954 6 C 0.016 3.984 7 N -0.947 5.947 8 Si 0.931 3.069 9 H -0.267 1.267 10 H -0.234 1.234 11 H -0.296 1.296 12 C -0.006 4.006 13 C -0.108 4.108 14 C 0.079 3.921 15 N -0.287 5.287 16 N -0.172 5.172 17 N -0.248 5.248 18 C -0.085 4.085 19 C 0.071 3.929 20 C -0.122 4.122 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.265 0.735 25 H 0.171 0.829 26 H 0.201 0.799 27 H 0.221 0.779 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 2.992 -9.423 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.020 3.980 3 H 0.069 0.931 4 C -0.545 4.545 5 H 0.064 0.936 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.755 3.245 9 H -0.192 1.192 10 H -0.157 1.157 11 H -0.222 1.222 12 C -0.012 4.012 13 C -0.130 4.130 14 C -0.046 4.046 15 N -0.058 5.058 16 N -0.144 5.144 17 N -0.104 5.104 18 C -0.254 4.254 19 C -0.055 4.055 20 C -0.144 4.144 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.188 0.812 26 H 0.218 0.782 27 H 0.238 0.762 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.027 1.717 -10.530 11.090 hybrid contribution 0.081 1.191 1.444 1.873 sum -2.946 2.907 -9.087 9.985 Atomic orbital electron populations 1.21929 0.95451 1.01613 1.00196 1.18335 0.94567 0.95678 0.89377 0.93105 1.21106 1.43217 0.94371 0.95813 0.93618 1.25864 0.94210 1.03240 0.94887 1.70030 1.47556 1.38004 1.03086 0.85976 0.80440 0.80472 0.77588 1.19184 1.15722 1.22241 1.20517 0.92358 0.94098 0.94233 1.21239 1.00882 0.94953 0.95941 1.22047 0.93842 1.00528 0.88213 1.48218 1.30743 1.09871 1.16963 1.82107 1.19318 1.18090 0.94885 1.73532 1.13137 0.99068 1.24625 1.23670 1.07869 1.01168 0.92697 1.20633 1.00256 0.85779 0.98788 1.20699 1.00177 1.02185 0.91298 0.92706 0.92603 0.93759 0.92604 0.81184 0.78190 0.76213 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.94 71.98 0.64 -3.78 15 2 C 0.04 1.48 2.12 -12.29 -0.03 1.46 15 3 H 0.05 1.88 5.07 -2.39 -0.01 1.86 15 4 C -0.51 -24.73 8.65 25.60 0.22 -24.51 15 5 H 0.05 2.47 7.66 -2.91 -0.02 2.45 15 6 C 0.02 0.81 5.47 84.65 0.46 1.28 15 7 N -0.95 -54.80 13.96 21.45 0.30 -54.50 15 8 Si 0.93 39.04 26.94 68.60 1.85 40.89 15 9 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 10 H -0.23 -8.67 6.78 99.48 0.67 -8.00 15 11 H -0.30 -12.76 7.11 99.48 0.71 -12.05 15 12 C -0.01 -0.20 4.76 -19.81 -0.09 -0.29 15 13 C -0.11 -3.20 8.62 22.08 0.19 -3.01 15 14 C 0.08 2.20 11.21 83.22 0.93 3.13 15 15 N -0.29 -9.51 3.95 -188.05 -0.74 -10.25 15 16 N -0.17 -6.25 13.86 37.02 0.51 -5.74 15 17 N -0.25 -8.69 12.24 -57.05 -0.70 -9.39 15 18 C -0.09 -2.54 12.02 84.64 1.02 -1.52 15 19 C 0.07 2.24 6.88 38.94 0.27 2.51 15 20 C -0.12 -3.71 9.73 22.37 0.22 -3.49 15 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.05 1.76 7.59 -2.39 -0.02 1.74 15 23 H 0.04 1.51 8.04 -2.39 -0.02 1.50 15 24 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 25 H 0.17 4.66 7.62 -2.91 -0.02 4.64 15 26 H 0.20 4.09 8.06 -2.91 -0.02 4.07 15 27 H 0.22 4.62 8.06 -2.91 -0.02 4.60 15 28 H 0.17 4.27 7.94 -2.91 -0.02 4.25 15 Total: -1.00 -63.20 246.82 6.19 -57.02 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.13 Total: 10.19 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.83 Total: -28.22 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -0.63 Total: -79.88 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.85 Total: 40.89 kcal Total: -63.20 6.19 -57.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222789.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.812 kcal (2) G-P(sol) polarization free energy of solvation -63.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds