Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99930 * 2 1 4 4 H 1.48495 * 109.46913 * 270.00181 * 3 2 1 5 5 H 1.48502 * 109.47085 * 30.00153 * 3 2 1 6 6 H 1.48501 * 109.46988 * 150.00259 * 3 2 1 7 7 C 1.37875 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00015 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99958 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47128 * 179.97438 * 10 9 7 12 12 C 1.38664 * 125.50401 * 124.97483 * 11 10 9 13 13 C 1.38861 * 107.64587 * 180.02562 * 12 11 10 14 14 N 1.33985 * 132.57147 * 179.97438 * 13 12 11 15 15 C 1.31218 * 120.80648 * 179.77449 * 14 13 12 16 16 C 1.40241 * 120.28500 * 0.50714 * 15 14 13 17 17 C 1.35526 * 119.44974 * 359.48010 * 16 15 14 18 18 N 1.36519 * 119.12477 * 0.26065 * 17 16 15 19 19 N 1.31417 * 125.50266 * 304.97499 * 11 10 9 20 20 H 0.96996 * 120.00266 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47694 * 59.99731 * 9 7 2 22 22 H 1.09009 * 109.47185 * 299.99736 * 9 7 2 23 23 H 1.09003 * 109.47100 * 59.99819 * 10 9 7 24 24 H 1.09001 * 109.46907 * 299.99586 * 10 9 7 25 25 H 1.08001 * 126.17669 * 359.96275 * 12 11 10 26 26 H 1.08003 * 119.85624 * 180.26451 * 15 14 13 27 27 H 1.08002 * 120.27816 * 179.76691 * 16 15 14 28 28 H 1.08004 * 120.43611 * 180.27785 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5285 -2.6365 -0.0035 12 6 6.3346 -3.2841 0.9205 13 6 7.6560 -3.0393 0.5709 14 7 8.8218 -3.4180 1.1120 15 6 9.9620 -3.0492 0.5775 16 6 9.9773 -2.2401 -0.5679 17 6 8.8045 -1.8510 -1.1245 18 7 7.6319 -2.2525 -0.5523 19 7 6.2910 -2.0228 -0.8804 20 1 -0.4850 0.8400 0.0004 21 1 3.8753 -0.6804 0.8888 22 1 3.8745 -0.6800 -0.8912 23 1 3.6578 -3.1498 -0.8925 24 1 3.6586 -3.1509 0.8876 25 1 5.9958 -3.8718 1.7609 26 1 10.8928 -3.3669 1.0239 27 1 10.9159 -1.9335 -1.0055 28 1 8.7977 -1.2316 -2.0093 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261223010.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = 85.066393 kcal Electronic energy + Delta-G solvation = -13478.144569 eV Core-core repulsion = 11109.114262 eV Total energy + Delta-G solvation = -2369.030307 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.25843 -39.21401 -36.00648 -34.95420 -33.71489 -31.44058 -30.13037 -27.80733 -25.34067 -24.17960 -22.83682 -21.26216 -19.20307 -18.84288 -18.01729 -17.05421 -16.85600 -16.33960 -15.47485 -15.10589 -14.94013 -14.62119 -14.17504 -13.83949 -13.75521 -13.27007 -12.98954 -12.46737 -12.30649 -11.89022 -11.75461 -11.64588 -11.41259 -10.82314 -10.76824 -10.30381 -8.94524 -8.31687 -6.35162 -0.33199 -0.07826 1.16435 1.31912 1.32860 1.45773 1.55785 2.33371 2.48751 2.91241 3.03284 3.12348 3.61816 3.95975 4.15925 4.25242 4.43384 4.55860 4.65336 4.71693 4.75933 4.94726 5.17615 5.29936 5.39649 5.44086 5.60665 5.69774 6.24474 6.46337 6.66759 6.71499 7.29252 8.84688 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.053114 B = 0.006397 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.045104 B = 4375.872166 C = 4673.506189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.531 4.531 8 H 0.045 0.955 9 C 0.004 3.996 10 C -0.024 4.024 11 C 0.119 3.881 12 C -0.288 4.288 13 C 0.242 3.758 14 N -0.498 5.498 15 C 0.184 3.816 16 C -0.203 4.203 17 C 0.134 3.866 18 N -0.324 5.324 19 N -0.346 5.346 20 H 0.268 0.732 21 H 0.011 0.989 22 H 0.014 0.986 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.168 0.832 26 H 0.227 0.773 27 H 0.221 0.779 28 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.237 -3.787 -1.066 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.569 4.569 8 H 0.063 0.937 9 C -0.034 4.034 10 C -0.063 4.063 11 C -0.038 4.038 12 C -0.318 4.318 13 C 0.014 3.986 14 N -0.211 5.211 15 C 0.001 3.999 16 C -0.226 4.226 17 C 0.001 3.999 18 N -0.095 5.095 19 N -0.172 5.172 20 H 0.077 0.923 21 H 0.030 0.970 22 H 0.032 0.968 23 H 0.097 0.903 24 H 0.109 0.891 25 H 0.185 0.815 26 H 0.243 0.757 27 H 0.237 0.763 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 24.740 -3.467 -1.370 25.019 hybrid contribution -0.419 0.703 -0.027 0.819 sum 24.320 -2.764 -1.397 24.517 Atomic orbital electron populations 1.70038 1.07934 1.28164 1.52468 1.25875 0.95566 1.03065 0.94162 0.85725 0.79119 0.79055 0.79129 1.19208 1.20283 1.18447 1.21421 0.91319 0.93703 1.50424 0.93673 1.19362 0.94284 0.93608 0.96176 1.20035 0.83840 0.98934 1.03479 1.22586 0.97531 0.92237 0.91488 1.21104 0.88250 1.14990 1.07505 1.20819 0.95310 0.94579 0.87870 1.68324 0.96734 1.24763 1.31287 1.24398 0.96445 0.88394 0.90665 1.22437 0.98905 1.02289 0.98963 1.22930 0.81126 0.96670 0.99149 1.47466 1.06869 1.34314 1.20853 1.77833 0.83703 1.29589 1.26058 0.92338 0.97035 0.96772 0.90315 0.89067 0.81455 0.75673 0.76261 0.78157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.35 13.96 21.45 0.30 -60.05 15 2 C 0.01 0.64 5.47 84.65 0.46 1.11 15 3 Si 0.95 46.76 27.47 68.60 1.88 48.64 15 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 15 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.26 -12.50 6.54 99.48 0.65 -11.85 15 7 C -0.53 -31.68 9.66 25.60 0.25 -31.44 15 8 H 0.04 2.88 7.99 -2.91 -0.02 2.86 15 9 C 0.00 0.19 3.99 29.85 0.12 0.31 15 10 C -0.02 -1.02 5.72 29.85 0.17 -0.85 15 11 C 0.12 4.80 6.43 42.72 0.27 5.07 15 12 C -0.29 -10.45 10.81 22.52 0.24 -10.21 15 13 C 0.24 7.93 7.92 133.13 1.05 8.99 15 14 N -0.50 -12.84 10.48 -192.55 -2.02 -14.86 15 15 C 0.18 2.52 11.27 85.27 0.96 3.48 15 16 C -0.20 -2.07 10.05 22.13 0.22 -1.85 15 17 C 0.13 2.56 11.30 83.34 0.94 3.50 15 18 N -0.32 -10.30 3.90 -192.51 -0.75 -11.05 15 19 N -0.35 -13.78 12.62 -47.84 -0.60 -14.39 15 20 H 0.27 15.88 8.31 -92.71 -0.77 15.11 15 21 H 0.01 0.59 7.20 -2.38 -0.02 0.57 15 22 H 0.01 0.73 7.57 -2.38 -0.02 0.71 15 23 H 0.08 3.33 8.14 -2.39 -0.02 3.32 15 24 H 0.09 3.67 8.11 -2.39 -0.02 3.65 15 25 H 0.17 5.45 8.06 -2.91 -0.02 5.42 15 26 H 0.23 0.67 8.06 -2.91 -0.02 0.64 15 27 H 0.22 -0.24 8.06 -2.91 -0.02 -0.26 15 28 H 0.20 2.55 8.06 -2.91 -0.02 2.52 15 Total: -1.00 -79.98 251.37 4.61 -75.37 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: 1.10 Total: -1.77 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.70 Total: -21.89 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -3.07 Total: -100.35 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.64 kcal Total: -79.98 4.61 -75.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261223010.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.436 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds