Wall clock time and date at job start Mon Mar 30 2020 03:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 13 13 C 1.39451 * 125.99644 * 119.71451 * 12 2 1 14 14 C 1.38406 * 106.82958 * 179.88084 * 13 12 2 15 15 C 1.40425 * 133.89390 * 180.09200 * 14 13 12 16 16 N 1.31459 * 119.39232 * 180.32237 * 15 14 13 17 17 C 1.33279 * 121.78094 * 359.97438 * 16 15 14 18 18 N 1.30479 * 122.19333 * 0.02562 * 17 16 15 19 19 N 1.38508 * 107.50599 * 0.38484 * 14 13 12 20 20 C 1.34501 * 108.49514 * 359.75928 * 19 14 13 21 21 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 24 24 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 25 25 H 1.08002 * 126.58497 * 359.97438 * 13 12 2 26 26 H 1.08003 * 120.30112 * 0.33560 * 15 14 13 27 27 H 1.07994 * 118.89961 * 180.02562 * 17 16 15 28 28 H 1.08001 * 125.41642 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1857 4.8162 11 1 1.1677 -1.5865 4.8165 12 6 2.0324 -0.7105 -1.2304 13 6 2.8329 -0.1551 -2.2281 14 6 3.0586 -1.1516 -3.1618 15 6 3.7756 -1.2116 -4.3677 16 7 3.7962 -2.3345 -5.0508 17 6 3.1537 -3.4239 -4.6304 18 7 2.4680 -3.4415 -3.5204 19 7 2.3922 -2.2863 -2.7295 20 6 1.7797 -2.0040 -1.5658 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7094 1.1619 3.4844 25 1 3.2064 0.8576 -2.2645 26 1 4.3054 -0.3431 -4.7304 27 1 3.2024 -4.3219 -5.2283 28 1 1.1826 -2.6949 -0.9891 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261225420.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:08 Heat of formation + Delta-G solvation = 112.983724 kcal Electronic energy + Delta-G solvation = -13816.048798 eV Core-core repulsion = 11448.229076 eV Total energy + Delta-G solvation = -2367.819721 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70372 -38.05338 -34.43343 -33.51886 -31.26243 -28.92569 -28.62589 -25.15424 -24.41558 -22.80522 -21.34708 -19.32618 -18.34096 -16.98248 -16.00645 -15.40981 -14.96187 -14.60083 -14.25140 -13.61627 -12.85854 -12.68040 -12.55552 -11.83571 -11.56909 -11.30511 -11.08043 -10.94697 -10.76864 -10.35503 -10.10243 -9.76199 -9.40363 -9.04190 -8.39609 -7.88167 -7.61443 -6.02759 -4.09182 0.58494 1.71093 2.32885 3.28211 3.36390 3.39368 3.48458 3.68705 4.14494 4.37936 4.42704 4.97669 5.28521 5.40555 5.71351 5.79697 5.95725 6.14320 6.54464 6.56001 6.82448 6.98350 7.10797 7.21758 7.32747 7.50165 7.70796 7.92513 8.08385 8.26878 8.38146 8.93507 9.55880 11.02890 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.007309 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.365897 B = 3829.807004 C = 4018.671953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.101 3.899 3 H 0.041 0.959 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.081 4.081 13 C -0.123 4.123 14 C -0.120 4.120 15 C 0.268 3.732 16 N -0.574 5.574 17 C 0.272 3.728 18 N -0.324 5.324 19 N -0.255 5.255 20 C 0.059 3.941 21 H 0.009 0.991 22 H 0.026 0.974 23 H 0.086 0.914 24 H 0.260 0.740 25 H 0.151 0.849 26 H 0.180 0.820 27 H 0.210 0.790 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -2.885 -10.386 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 H 0.059 0.941 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.086 4.086 13 C -0.155 4.155 14 C -0.227 4.227 15 C 0.082 3.918 16 N -0.291 5.291 17 C -0.027 4.027 18 N -0.139 5.139 19 N -0.019 5.019 20 C -0.083 4.083 21 H 0.028 0.972 22 H 0.046 0.954 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.169 0.831 26 H 0.197 0.803 27 H 0.226 0.774 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.737 -4.072 -10.698 11.770 hybrid contribution 0.336 -0.037 1.202 1.249 sum 3.074 -4.109 -9.496 10.794 Atomic orbital electron populations 1.21794 0.97659 0.99247 1.00360 1.17427 0.92506 0.95110 0.86819 0.94089 1.21161 1.31104 1.12412 0.89911 0.92516 1.24937 0.95035 0.94984 0.98903 1.69882 1.36734 1.22853 1.23355 0.86544 0.78662 0.79744 0.83119 1.19835 1.21010 1.21032 1.20639 0.98027 0.92249 0.97721 1.21250 1.02340 0.98181 0.93683 1.19974 1.09912 0.90855 1.01955 1.23063 0.87306 0.95560 0.85872 1.68408 1.25337 1.00182 1.35220 1.25503 0.89366 0.97606 0.90226 1.75935 1.23569 1.06969 1.07424 1.45199 1.34177 1.06059 1.16442 1.21702 1.02712 0.98312 0.85580 0.97152 0.95444 0.89530 0.92971 0.83123 0.80274 0.77375 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.85 37.16 0.33 -2.75 15 2 C 0.10 2.41 2.66 -92.92 -0.25 2.16 15 3 H 0.04 1.04 8.12 -51.93 -0.42 0.62 15 4 C -0.51 -13.38 8.40 -34.44 -0.29 -13.67 15 5 H 0.06 1.51 7.71 -52.49 -0.40 1.11 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -24.48 11.32 55.43 0.63 -23.86 15 8 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 15 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 12 C -0.08 -1.69 4.78 -104.97 -0.50 -2.20 15 13 C -0.12 -2.21 10.90 -39.07 -0.43 -2.64 15 14 C -0.12 -2.08 6.85 -83.96 -0.58 -2.66 15 15 C 0.27 3.76 11.35 -16.89 -0.19 3.57 15 16 N -0.57 -8.30 10.40 -14.26 -0.15 -8.45 15 17 C 0.27 3.88 12.35 -91.98 -1.14 2.74 15 18 N -0.32 -5.65 11.98 29.26 0.35 -5.30 15 19 N -0.26 -4.89 3.99 -10.83 -0.04 -4.93 15 20 C 0.06 1.18 11.24 -17.19 -0.19 0.99 15 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 22 H 0.03 0.60 8.00 -51.93 -0.42 0.18 15 23 H 0.09 2.20 6.07 -51.93 -0.32 1.89 15 24 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 25 H 0.15 2.30 8.06 -52.49 -0.42 1.88 15 26 H 0.18 1.71 8.06 -52.48 -0.42 1.28 15 27 H 0.21 2.03 8.06 -52.49 -0.42 1.60 15 28 H 0.17 3.35 8.06 -52.49 -0.42 2.93 15 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -29.86 249.83 -6.60 -36.46 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -2.81 Total: -0.64 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.33 Total: -12.88 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.79 Total: -42.53 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.86 -6.60 -36.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225420.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.446 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds