Wall clock time and date at job start Mon Mar 30 2020 02:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40199 * 120.33692 * 2 1 4 4 N 1.31226 * 120.37392 * 180.02562 * 3 2 1 5 5 C 1.34084 * 120.92598 * 359.97438 * 4 3 2 6 6 N 1.32515 * 131.95070 * 180.02562 * 5 4 3 7 7 C 1.33627 * 109.26193 * 179.97438 * 6 5 4 8 8 C 1.50701 * 125.69156 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46826 * 305.04330 * 8 7 6 10 10 H 1.08004 * 120.00289 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00100 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00347 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99931 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47178 * 89.99609 * 13 11 9 15 15 H 1.48501 * 109.47466 * 209.99987 * 13 11 9 16 16 H 1.48500 * 109.47056 * 329.99894 * 13 11 9 17 17 C 1.35004 * 108.62528 * 359.97438 * 7 6 5 18 18 N 1.36839 * 107.09498 * 359.97438 * 17 7 6 19 19 C 1.35582 * 120.33285 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47221 * 90.00012 * 1 2 3 21 21 H 1.08999 * 109.47231 * 210.00198 * 1 2 3 22 22 H 1.08999 * 109.46652 * 329.99853 * 1 2 3 23 23 H 1.07993 * 119.81067 * 0.02562 * 3 2 1 24 24 H 1.09005 * 109.46791 * 65.03292 * 8 7 6 25 25 H 1.08999 * 109.47641 * 185.04197 * 8 7 6 26 26 H 0.97000 * 120.00413 * 179.97438 * 12 11 9 27 27 H 1.07998 * 126.45174 * 179.74128 * 17 7 6 28 28 H 1.07996 * 120.46571 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.2100 0.0000 4 7 3.5274 1.2109 -0.0005 5 6 4.2172 0.0611 -0.0005 6 7 5.5181 -0.1915 -0.0005 7 6 5.7104 -1.5138 0.0000 8 6 7.0481 -2.2078 -0.0003 9 6 7.8690 -1.7154 -1.1643 10 1 7.4626 -0.9745 -1.8368 11 6 9.1391 -2.2109 -1.3707 12 7 9.8553 -1.7816 -2.3867 13 14 9.8424 -3.4919 -0.2073 14 1 9.5009 -4.8500 -0.7014 15 1 11.3188 -3.3451 -0.1434 16 1 9.2667 -3.2989 1.1479 17 6 4.5064 -2.1246 0.0010 18 7 3.5560 -1.1402 0.0016 19 6 2.1917 -1.1702 -0.0005 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3632 0.8900 0.5139 23 1 1.6776 2.1467 0.0004 24 1 7.5709 -1.9895 0.9310 25 1 6.8993 -3.2838 -0.0900 26 1 10.7489 -2.1299 -2.5318 27 1 4.3272 -3.1896 -0.0023 28 1 1.6648 -2.1129 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:46 Heat of formation + Delta-G solvation = 76.019948 kcal Electronic energy + Delta-G solvation = -13595.109662 eV Core-core repulsion = 11225.687071 eV Total energy + Delta-G solvation = -2369.422591 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.90734 -39.51616 -35.72508 -35.26014 -33.83562 -31.96984 -29.56209 -27.51209 -25.85571 -24.24024 -23.38064 -21.38617 -19.21843 -19.02722 -18.11950 -17.24797 -16.77616 -16.27449 -15.14452 -15.06234 -14.75838 -14.44637 -14.03300 -13.85151 -13.64767 -13.22777 -13.03414 -12.77656 -12.39147 -12.23349 -11.77002 -11.59449 -11.28519 -10.77963 -10.64956 -9.62742 -9.10097 -8.26874 -6.32574 -0.30699 0.12007 1.38150 1.43462 1.51889 1.55340 1.85383 2.39037 2.61479 2.71679 3.07136 3.38708 3.57348 3.87312 4.02596 4.33465 4.39107 4.55062 4.71516 4.92066 4.95700 5.08467 5.17958 5.22141 5.41385 5.50966 5.61517 5.84619 6.30271 6.64050 6.72491 7.12408 7.28711 8.91391 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.067983 B = 0.006429 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.771613 B = 4354.028862 C = 4566.354043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.172 4.172 3 C 0.175 3.825 4 N -0.487 5.487 5 C 0.341 3.659 6 N -0.526 5.526 7 C 0.077 3.923 8 C 0.061 3.939 9 C -0.519 4.519 10 H 0.013 0.987 11 C 0.000 4.000 12 N -0.956 5.956 13 Si 0.964 3.036 14 H -0.252 1.252 15 H -0.285 1.285 16 H -0.244 1.244 17 C -0.095 4.095 18 N -0.400 5.400 19 C 0.095 3.905 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.095 0.905 23 H 0.220 0.780 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.268 0.732 27 H 0.227 0.773 28 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.808 -2.528 7.760 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.178 4.178 3 C -0.011 4.011 4 N -0.200 5.200 5 C -0.008 4.008 6 N -0.250 5.250 7 C -0.055 4.055 8 C 0.023 3.977 9 C -0.557 4.557 10 H 0.031 0.969 11 C -0.196 4.196 12 N -0.597 5.597 13 Si 0.785 3.215 14 H -0.177 1.177 15 H -0.211 1.211 16 H -0.167 1.167 17 C -0.225 4.225 18 N -0.077 5.077 19 C -0.035 4.035 20 H 0.107 0.893 21 H 0.108 0.892 22 H 0.114 0.886 23 H 0.236 0.764 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.243 0.757 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -22.315 -1.335 7.676 23.636 hybrid contribution 0.166 -1.205 -0.176 1.229 sum -22.149 -2.540 7.500 23.522 Atomic orbital electron populations 1.20706 0.84139 1.05501 1.04320 1.20972 1.00927 0.91148 1.04708 1.24147 0.86938 1.01105 0.88943 1.67886 1.11114 1.23339 1.17646 1.22150 0.89165 0.82899 1.06577 1.70493 1.11912 1.18126 1.24474 1.21396 0.96877 0.88459 0.98794 1.18102 0.87531 0.95712 0.96307 1.21087 1.00300 1.23342 1.10967 0.96867 1.26137 0.96709 0.99419 0.97332 1.70094 1.11651 1.45995 1.31942 0.85477 0.77216 0.78864 0.79951 1.17660 1.21064 1.16704 1.22852 0.86001 0.95669 1.17992 1.44037 1.07726 1.09665 1.46315 1.22927 0.79394 1.03543 0.97664 0.89278 0.89222 0.88594 0.76372 0.94805 0.91847 0.92348 0.75652 0.76803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.03 71.24 0.71 0.27 15 2 C -0.17 -2.79 5.86 -20.00 -0.12 -2.91 15 3 C 0.17 3.87 10.96 85.26 0.93 4.80 15 4 N -0.49 -18.08 10.48 -197.26 -2.07 -20.15 15 5 C 0.34 14.89 8.92 261.39 2.33 17.23 15 6 N -0.53 -28.22 11.28 -187.65 -2.12 -30.34 15 7 C 0.08 3.73 6.27 41.54 0.26 3.99 15 8 C 0.06 3.16 4.60 29.10 0.13 3.30 15 9 C -0.52 -33.03 9.62 25.60 0.25 -32.78 15 10 H 0.01 0.96 7.98 -2.91 -0.02 0.93 15 11 C 0.00 -0.01 5.47 84.66 0.46 0.45 15 12 N -0.96 -63.68 13.96 21.45 0.30 -63.38 15 13 Si 0.96 45.22 27.47 68.60 1.88 47.10 15 14 H -0.25 -10.84 7.11 99.48 0.71 -10.13 15 15 H -0.28 -13.20 7.11 99.48 0.71 -12.50 15 16 H -0.24 -10.55 6.54 99.48 0.65 -9.90 15 17 C -0.10 -3.47 11.64 83.17 0.97 -2.50 15 18 N -0.40 -13.55 2.95 -357.67 -1.05 -14.60 15 19 C 0.10 1.94 10.72 83.36 0.89 2.83 15 20 H 0.09 0.32 8.14 -2.39 -0.02 0.30 15 21 H 0.09 0.19 8.08 -2.39 -0.02 0.17 15 22 H 0.10 0.19 8.10 -2.39 -0.02 0.17 15 23 H 0.22 2.57 8.06 -2.91 -0.02 2.55 15 24 H 0.03 1.74 7.20 -2.38 -0.02 1.73 15 25 H 0.06 2.81 7.53 -2.39 -0.02 2.80 15 26 H 0.27 16.40 8.31 -92.71 -0.77 15.63 15 27 H 0.23 5.76 8.06 -2.91 -0.02 5.74 15 28 H 0.22 2.13 8.06 -2.91 -0.02 2.11 15 Total: -1.00 -91.97 250.50 4.88 -87.09 By element: Atomic # 1 Polarization: -1.52 SS G_CDS: 1.11 Total: -0.42 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 6.83 Total: -5.32 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -4.94 Total: -128.46 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -91.97 4.88 -87.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.107 kcal (2) G-P(sol) polarization free energy of solvation -91.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds