Wall clock time and date at job start Mon Mar 30 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47018 * 2 1 4 4 C 1.50695 * 109.47363 * 239.99961 * 2 1 3 5 5 H 1.08001 * 119.99788 * 245.45886 * 4 2 1 6 6 C 1.37875 * 120.00134 * 65.45999 * 4 2 1 7 7 N 1.31511 * 120.00107 * 9.59844 * 6 4 2 8 8 Si 1.86803 * 119.99961 * 189.59792 * 6 4 2 9 9 H 1.48498 * 109.47117 * 84.99479 * 8 6 4 10 10 H 1.48501 * 109.46970 * 204.99477 * 8 6 4 11 11 H 1.48503 * 109.47236 * 324.99551 * 8 6 4 12 12 C 1.50701 * 109.47238 * 119.99381 * 2 1 3 13 13 C 1.36424 * 120.02624 * 60.00610 * 12 2 1 14 14 C 1.38882 * 120.75534 * 179.72484 * 13 12 2 15 15 C 1.37689 * 120.43543 * 0.02562 * 14 13 12 16 16 C 1.39050 * 119.69567 * 359.97438 * 15 14 13 17 17 N 1.37472 * 133.98880 * 180.02562 * 16 15 14 18 18 H 0.96998 * 126.75957 * 359.95152 * 17 16 15 19 19 N 1.40286 * 106.48251 * 179.97438 * 17 16 15 20 20 N 1.28633 * 109.43533 * 0.02562 * 19 17 16 21 21 C 1.34825 * 110.32805 * 359.97438 * 20 19 17 22 22 H 1.09000 * 109.47013 * 63.25757 * 1 2 3 23 23 H 1.09002 * 109.46717 * 183.25267 * 1 2 3 24 24 H 1.09000 * 109.47276 * 303.25167 * 1 2 3 25 25 H 0.97004 * 120.00210 * 179.97438 * 7 6 4 26 26 H 1.07994 * 119.62259 * 359.69716 * 13 12 2 27 27 H 1.07993 * 119.77954 * 179.97438 * 14 13 12 28 28 H 1.08005 * 120.14834 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7947 -0.1774 -2.4795 7 7 1.3001 1.0358 -2.5936 8 14 2.1752 -1.1786 -4.0100 9 1 1.0226 -2.0608 -4.3236 10 1 2.4222 -0.2622 -5.1522 11 1 3.3832 -2.0085 -3.7710 12 6 2.0324 -0.7103 1.2305 13 6 1.7033 -2.0164 1.4470 14 6 2.1625 -2.6873 2.5730 15 6 2.9596 -2.0427 3.4922 16 6 3.3064 -0.7115 3.2898 17 7 4.0634 0.1955 3.9929 18 1 4.5262 0.0394 4.8310 19 7 4.0343 1.3913 3.2599 20 7 3.3210 1.2276 2.2021 21 6 2.8422 -0.0317 2.1502 22 1 -0.3633 0.4624 -0.9177 23 1 -0.3633 -1.0261 0.0583 24 1 -0.3634 0.5635 0.8594 25 1 1.1332 1.4110 -3.4724 26 1 1.0781 -2.5344 0.7350 27 1 1.8920 -3.7211 2.7290 28 1 3.3139 -2.5688 4.3664 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:48 Heat of formation + Delta-G solvation = 97.535133 kcal Electronic energy + Delta-G solvation = -14030.800998 eV Core-core repulsion = 11662.311376 eV Total energy + Delta-G solvation = -2368.489622 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.56845 -37.45748 -34.51743 -32.79658 -31.10188 -29.63909 -28.09524 -25.09280 -23.61552 -22.73771 -21.74462 -20.00232 -17.49579 -16.92094 -16.05929 -15.12105 -14.97346 -14.55988 -14.27624 -13.22033 -12.62475 -11.90408 -11.78112 -11.75965 -11.53157 -11.34567 -11.03353 -10.89142 -10.67502 -10.53540 -10.24055 -10.10704 -9.36484 -9.03165 -8.36325 -8.33110 -7.62104 -6.01653 -4.04977 0.98161 1.89027 2.71770 2.81386 3.32147 3.38901 3.41311 4.21054 4.46592 4.68146 5.09973 5.29228 5.30145 5.34268 5.58840 5.79254 6.13374 6.41618 6.47915 6.74204 6.78141 6.98294 7.03988 7.13540 7.30066 7.38006 7.69244 7.94639 8.00106 8.34523 8.50078 8.97006 9.57479 11.06945 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.009142 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.612744 B = 3062.041921 C = 3335.181768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.063 3.937 3 H 0.056 0.944 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.063 3.937 13 C -0.153 4.153 14 C -0.051 4.051 15 C -0.170 4.170 16 C 0.093 3.907 17 N -0.515 5.515 18 H 0.439 0.561 19 N -0.033 5.033 20 N -0.191 5.191 21 C -0.021 4.021 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.014 0.986 25 H 0.262 0.738 26 H 0.137 0.863 27 H 0.129 0.871 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 -6.496 10.882 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.045 3.955 3 H 0.075 0.925 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.719 3.281 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.059 3.941 13 C -0.174 4.174 14 C -0.073 4.073 15 C -0.193 4.193 16 C -0.029 4.029 17 N -0.238 5.238 18 H 0.284 0.716 19 N -0.014 5.014 20 N -0.070 5.070 21 C -0.145 4.145 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.146 0.854 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.921 -4.845 10.614 11.825 hybrid contribution 0.316 -1.618 -0.182 1.658 sum 2.237 -6.463 10.432 12.474 Atomic orbital electron populations 1.21747 0.97526 0.98851 1.00185 1.18021 0.92561 0.97194 0.87755 0.92545 1.21018 1.36321 1.08002 0.89682 0.92298 1.24940 0.95189 0.94597 0.98904 1.69979 1.44468 1.13764 1.23840 0.86626 0.78727 0.80108 0.82678 1.20479 1.21301 1.19964 1.19986 0.88112 0.92894 0.93143 1.20671 1.03969 0.94387 0.98390 1.21106 0.94087 0.99203 0.92920 1.19773 1.05946 0.90843 1.02697 1.19401 0.96123 0.93336 0.94028 1.47633 1.43653 1.09435 1.23077 0.71577 1.81533 1.16532 1.03128 1.00194 1.74576 1.05497 1.16407 1.10568 1.19834 1.06442 0.90602 0.97634 0.91084 0.94850 0.96704 0.92834 0.84504 0.85353 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.92 37.16 0.33 -2.60 15 2 C 0.06 1.59 2.35 -92.92 -0.22 1.38 15 3 H 0.06 1.61 7.67 -51.93 -0.40 1.21 15 4 C -0.51 -13.83 8.17 -34.44 -0.28 -14.11 15 5 H 0.06 1.56 7.54 -52.49 -0.40 1.17 15 6 C 0.07 1.82 5.17 -17.82 -0.09 1.72 15 7 N -0.88 -25.36 12.16 55.43 0.67 -24.68 15 8 Si 0.89 21.04 29.55 -169.99 -5.02 16.02 15 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15 12 C 0.06 1.37 4.76 -104.59 -0.50 0.87 15 13 C -0.15 -2.79 8.52 -40.00 -0.34 -3.13 15 14 C -0.05 -0.74 10.03 -39.54 -0.40 -1.14 15 15 C -0.17 -2.41 10.08 -39.48 -0.40 -2.81 15 16 C 0.09 1.59 7.35 -84.15 -0.62 0.97 15 17 N -0.52 -7.83 7.56 32.35 0.24 -7.59 15 18 H 0.44 4.54 8.96 -182.46 -1.64 2.90 15 19 N -0.03 -0.62 13.83 60.35 0.83 0.21 15 20 N -0.19 -4.24 12.08 32.07 0.39 -3.86 15 21 C -0.02 -0.45 6.93 -84.98 -0.59 -1.04 15 22 H 0.07 1.81 6.84 -51.93 -0.36 1.46 15 23 H 0.03 0.70 7.25 -51.93 -0.38 0.32 15 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 26 H 0.14 2.41 7.48 -52.49 -0.39 2.02 15 27 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.12 1.28 8.06 -52.48 -0.42 0.85 15 LS Contribution 247.10 15.07 3.72 3.72 Total: -1.00 -30.71 247.10 -6.22 -36.93 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.96 Total: -0.88 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -3.10 Total: -19.88 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 2.14 Total: -35.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.71 -6.22 -36.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.466 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds