Wall clock time and date at job start Mon Mar 30 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.36422 * 120.02975 * 299.72413 * 12 2 1 14 14 C 1.38874 * 120.75717 * 179.76643 * 13 12 2 15 15 C 1.37693 * 120.43686 * 0.51447 * 14 13 12 16 16 C 1.39051 * 119.69418 * 359.74734 * 15 14 13 17 17 N 1.37472 * 133.99283 * 180.02562 * 16 15 14 18 18 H 0.96995 * 126.76010 * 359.97438 * 17 16 15 19 19 N 1.40278 * 106.48470 * 179.97438 * 17 16 15 20 20 N 1.28644 * 109.43935 * 359.97438 * 19 17 16 21 21 C 1.34824 * 110.31952 * 0.02562 * 20 19 17 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 26 26 H 1.08001 * 119.61700 * 359.97438 * 13 12 2 27 27 H 1.08001 * 119.78582 * 180.27728 * 14 13 12 28 28 H 1.07999 * 120.15356 * 179.77020 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 6 1.7078 -2.0180 -1.4443 14 6 2.1584 -2.6858 -2.5755 15 6 2.9514 -2.0399 -3.4973 16 6 3.2979 -0.7085 -3.2952 17 7 4.0506 0.2000 -4.0008 18 1 4.5103 0.0451 -4.8407 19 7 4.0229 1.3953 -3.2670 20 7 3.3142 1.2300 -2.2062 21 6 2.8374 -0.0300 -2.1532 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8912 -0.5369 4.4374 26 1 1.0905 -2.5388 -0.7273 27 1 1.8883 -3.7198 -2.7313 28 1 3.3023 -2.5647 -4.3735 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:51 Heat of formation + Delta-G solvation = 106.901921 kcal Electronic energy + Delta-G solvation = -14088.530406 eV Core-core repulsion = 11720.446958 eV Total energy + Delta-G solvation = -2368.083448 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.67671 -37.60423 -34.70968 -32.84834 -31.44615 -29.75297 -28.59017 -25.07530 -23.74674 -22.84760 -21.88581 -20.03526 -17.63926 -16.92009 -16.46650 -15.26340 -15.11937 -14.64289 -14.40436 -13.40611 -12.81751 -12.26692 -12.03121 -11.87569 -11.85217 -11.60332 -11.22448 -11.12000 -10.77194 -10.50165 -10.15609 -9.89546 -9.37861 -9.12385 -8.56265 -8.45124 -7.72394 -6.07686 -4.08035 0.87767 1.79707 2.61592 2.72178 3.29528 3.42597 3.46122 4.12033 4.42820 4.57301 4.98334 5.19307 5.21662 5.28919 5.51098 5.67074 6.03141 6.12885 6.35210 6.36334 6.53377 6.62188 6.76650 6.85928 7.03587 7.18306 7.26115 7.54917 7.69905 8.38052 8.47790 8.94342 9.53125 11.04768 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037072 B = 0.009864 C = 0.008820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.100030 B = 2837.961472 C = 3173.783740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.032 3.968 3 H 0.049 0.951 4 C -0.509 4.509 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.898 5.898 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.262 1.262 12 C 0.065 3.935 13 C -0.143 4.143 14 C -0.051 4.051 15 C -0.164 4.164 16 C 0.093 3.907 17 N -0.513 5.513 18 H 0.440 0.560 19 N -0.029 5.029 20 N -0.197 5.197 21 C -0.021 4.021 22 H 0.031 0.969 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.265 0.735 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -2.415 -13.976 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.067 0.933 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.536 5.536 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.187 1.187 12 C 0.061 3.939 13 C -0.164 4.164 14 C -0.073 4.073 15 C -0.187 4.187 16 C -0.028 4.028 17 N -0.236 5.236 18 H 0.286 0.714 19 N -0.010 5.010 20 N -0.077 5.077 21 C -0.145 4.145 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.149 0.851 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.115 -0.914 -13.649 13.680 hybrid contribution -0.438 -0.368 -0.418 0.708 sum -0.553 -1.282 -14.066 14.135 Atomic orbital electron populations 1.22168 0.97841 1.01067 0.98952 1.18440 0.92169 0.97254 0.90821 0.93316 1.20882 1.32371 1.13603 0.87821 0.90435 1.24947 0.95665 0.96530 0.95691 1.69881 1.45475 1.40272 0.97940 0.86879 0.80427 0.83975 0.77240 1.20518 1.22437 1.18726 1.19494 0.89058 0.92921 0.92471 1.20706 1.03533 0.94079 0.98112 1.21127 0.94051 0.99347 0.92759 1.19825 1.05463 0.90759 1.02634 1.19369 0.96232 0.93333 0.93897 1.47623 1.43746 1.09313 1.22883 0.71429 1.81521 1.16303 1.03192 1.00010 1.74550 1.05935 1.16418 1.10812 1.19792 1.06451 0.90637 0.97606 0.95017 0.92478 0.93726 0.92543 0.84152 0.85085 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.48 37.16 0.32 -2.75 15 2 C 0.03 0.76 2.08 -92.92 -0.19 0.57 15 3 H 0.05 1.25 6.80 -51.93 -0.35 0.89 15 4 C -0.51 -14.05 8.80 -34.44 -0.30 -14.35 15 5 H 0.08 2.30 7.83 -52.49 -0.41 1.89 15 6 C 0.07 2.10 5.45 -17.82 -0.10 2.01 15 7 N -0.90 -27.16 13.96 55.43 0.77 -26.38 15 8 Si 0.88 22.00 24.37 -169.99 -4.14 17.85 15 9 H -0.28 -6.63 6.86 56.52 0.39 -6.24 15 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 15 11 H -0.26 -6.40 6.54 56.52 0.37 -6.03 15 12 C 0.06 1.36 4.75 -104.58 -0.50 0.86 15 13 C -0.14 -2.54 8.60 -40.00 -0.34 -2.88 15 14 C -0.05 -0.71 10.03 -39.55 -0.40 -1.11 15 15 C -0.16 -2.22 10.08 -39.48 -0.40 -2.62 15 16 C 0.09 1.53 7.35 -84.15 -0.62 0.91 15 17 N -0.51 -7.39 7.56 32.35 0.24 -7.15 15 18 H 0.44 4.24 8.96 -182.47 -1.64 2.61 15 19 N -0.03 -0.53 13.83 60.35 0.83 0.31 15 20 N -0.20 -4.17 12.08 32.07 0.39 -3.78 15 21 C -0.02 -0.42 6.93 -84.98 -0.59 -1.01 15 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.06 1.13 7.38 -51.93 -0.38 0.74 15 24 H 0.04 1.00 3.25 -51.93 -0.17 0.83 15 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 26 H 0.14 2.45 7.52 -52.49 -0.39 2.06 15 27 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 15 LS Contribution 239.15 15.07 3.60 3.60 Total: -1.00 -31.90 239.15 -5.21 -37.11 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.79 Total: -1.18 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -3.12 Total: -20.38 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 2.24 Total: -37.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.90 -5.21 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.015 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds