Wall clock time and date at job start Mon Mar 30 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 C 1.38541 * 126.19990 * 299.69158 * 12 2 1 14 14 N 1.31621 * 109.04562 * 179.81792 * 13 12 2 15 15 N 1.39733 * 108.86037 * 0.44731 * 14 13 12 16 16 C 1.36745 * 133.61342 * 179.76443 * 15 14 13 17 17 C 1.34939 * 119.76303 * 179.97438 * 16 15 14 18 18 N 1.33573 * 121.38204 * 0.02562 * 17 16 15 19 19 C 1.31255 * 121.25760 * 359.96908 * 18 17 16 20 20 C 1.37483 * 107.51014 * 359.72133 * 15 14 13 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 25 25 H 1.07998 * 125.47233 * 359.97438 * 13 12 2 26 26 H 1.08006 * 120.11870 * 359.92975 * 16 15 14 27 27 H 1.08004 * 119.31506 * 179.97438 * 17 16 15 28 28 H 1.08003 * 120.19900 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 6 2.0323 -0.7104 -1.2305 13 6 1.7829 -2.0295 -1.5728 14 7 2.3801 -2.2972 -2.7148 15 7 3.0525 -1.1529 -3.1520 16 6 3.8217 -0.8714 -4.2470 17 6 4.3488 0.3618 -4.3962 18 7 4.1367 1.3228 -3.4930 19 6 3.4061 1.1043 -2.4248 20 6 2.8332 -0.1638 -2.2226 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7090 1.1614 3.4844 25 1 1.1913 -2.7254 -0.9966 26 1 4.0073 -1.6336 -4.9894 27 1 4.9556 0.5761 -5.2636 28 1 3.2454 1.8939 -1.7057 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231324.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:55 Heat of formation + Delta-G solvation = 92.853251 kcal Electronic energy + Delta-G solvation = -14001.263186 eV Core-core repulsion = 11632.570542 eV Total energy + Delta-G solvation = -2368.692644 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.16648 -39.20514 -36.47496 -34.32189 -32.59515 -31.94489 -28.98605 -27.12429 -25.54624 -24.21232 -23.57412 -21.05552 -18.96527 -18.30106 -17.85659 -16.80922 -16.71422 -16.31680 -15.80192 -14.95787 -14.57022 -14.28890 -13.83314 -13.80819 -13.33403 -12.88415 -12.77269 -12.29865 -12.26491 -11.95277 -11.60814 -11.39684 -10.90480 -10.85651 -10.55554 -10.39265 -8.48609 -8.01403 -6.16189 -0.37095 0.05274 1.23410 1.46848 1.47355 1.54581 1.78092 2.47087 2.56268 3.21039 3.25748 3.40823 3.53434 4.04326 4.20742 4.42048 4.61445 4.68801 4.78753 5.04031 5.18298 5.27153 5.33167 5.60926 5.67544 5.72874 5.94924 6.14269 6.39373 6.53794 6.73444 6.90827 7.51395 9.00598 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040968 B = 0.008325 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.300924 B = 3362.375188 C = 3480.929515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.112 3.888 3 H 0.014 0.986 4 C -0.519 4.519 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 C -0.173 4.173 13 C 0.068 3.932 14 N -0.328 5.328 15 N -0.275 5.275 16 C 0.054 3.946 17 C 0.013 3.987 18 N -0.472 5.472 19 C 0.162 3.838 20 C 0.002 3.998 21 H 0.021 0.979 22 H 0.032 0.968 23 H 0.062 0.938 24 H 0.262 0.738 25 H 0.202 0.798 26 H 0.208 0.792 27 H 0.222 0.778 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -1.754 -11.165 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 H 0.032 0.968 4 C -0.558 4.558 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.197 1.197 12 C -0.188 4.188 13 C -0.105 4.105 14 N -0.156 5.156 15 N -0.047 5.047 16 C -0.072 4.072 17 C -0.127 4.127 18 N -0.183 5.183 19 C -0.019 4.019 20 C -0.117 4.117 21 H 0.040 0.960 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.218 0.782 26 H 0.225 0.775 27 H 0.238 0.762 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.871 -1.918 -12.225 13.299 hybrid contribution -0.396 -0.642 1.833 1.982 sum 4.475 -2.561 -10.392 11.601 Atomic orbital electron populations 1.21619 0.97363 0.99291 0.99575 1.17054 0.92650 0.93677 0.87334 0.96818 1.21321 1.30998 1.12321 0.91134 0.93441 1.25598 0.95276 0.95650 1.01357 1.69986 1.37453 1.23840 1.24012 0.85760 0.78522 0.78968 0.79264 1.20314 1.20973 1.19661 1.20751 1.04143 0.94993 0.98874 1.23921 0.97582 0.96426 0.92574 1.77668 1.17697 1.03592 1.16624 1.46571 1.32794 1.09171 1.16132 1.23156 0.93548 1.01089 0.89451 1.22903 1.01905 0.87054 1.00793 1.68211 1.13546 1.34374 1.02181 1.23104 0.90897 0.92803 0.95106 1.20597 1.04102 0.93019 0.93984 0.96021 0.94891 0.91944 0.92913 0.78184 0.77539 0.76185 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.86 71.98 0.64 -5.03 15 2 C 0.11 5.50 2.67 -12.29 -0.03 5.46 15 3 H 0.01 0.72 7.79 -2.39 -0.02 0.70 15 4 C -0.52 -27.68 8.41 25.60 0.22 -27.46 15 5 H 0.05 2.54 7.72 -2.91 -0.02 2.52 15 6 C 0.02 1.08 5.30 84.65 0.45 1.53 15 7 N -0.91 -50.77 11.32 21.45 0.24 -50.53 15 8 Si 0.95 42.67 29.54 68.60 2.03 44.70 15 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 12 C -0.17 -7.49 4.83 -19.67 -0.09 -7.58 15 13 C 0.07 2.73 11.42 84.80 0.97 3.70 15 14 N -0.33 -12.48 12.68 -57.47 -0.73 -13.21 15 15 N -0.27 -9.65 3.96 -187.67 -0.74 -10.39 15 16 C 0.05 1.34 11.25 83.17 0.94 2.27 15 17 C 0.01 0.30 11.06 83.67 0.93 1.22 15 18 N -0.47 -13.93 10.44 -195.61 -2.04 -15.97 15 19 C 0.16 5.52 11.20 85.36 0.96 6.48 15 20 C 0.00 0.09 6.78 38.95 0.26 0.35 15 21 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 22 H 0.03 1.46 8.03 -2.39 -0.02 1.44 15 23 H 0.06 3.23 6.07 -2.39 -0.01 3.22 15 24 H 0.26 13.92 8.31 -92.71 -0.77 13.15 15 25 H 0.20 7.27 8.06 -2.91 -0.02 7.25 15 26 H 0.21 3.29 8.06 -2.91 -0.02 3.27 15 27 H 0.22 2.72 8.06 -2.91 -0.02 2.70 15 28 H 0.19 5.94 7.85 -2.91 -0.02 5.92 15 Total: -1.00 -63.26 249.13 5.14 -58.12 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.16 Total: 6.34 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 5.22 Total: -19.06 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -3.27 Total: -90.10 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -63.26 5.14 -58.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231324.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.970 kcal (2) G-P(sol) polarization free energy of solvation -63.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds