Wall clock time and date at job start Mon Mar 30 2020 02:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.40561 * 119.76896 * 269.72738 * 11 10 9 13 13 C 1.36024 * 119.69538 * 179.77580 * 12 11 10 14 14 C 1.40769 * 119.14751 * 0.47471 * 13 12 11 15 15 C 1.38436 * 133.92410 * 179.77695 * 14 13 12 16 16 N 1.32504 * 108.33983 * 179.97438 * 15 14 13 17 17 N 1.28731 * 110.65598 * 0.02562 * 16 15 14 18 18 N 1.37422 * 119.90276 * 359.77222 * 14 13 12 19 19 C 1.34938 * 119.76499 * 90.00091 * 11 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.08004 * 120.14822 * 0.02562 * 12 11 10 26 26 H 1.08000 * 120.42770 * 180.26895 * 13 12 11 27 27 H 1.08001 * 125.83043 * 359.97438 * 15 14 13 28 28 H 1.08003 * 119.73639 * 359.95583 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1481 -5.5741 1.2216 13 6 0.4640 -6.7498 1.2204 14 6 0.1212 -7.3424 -0.0096 15 6 -0.5481 -8.5013 -0.3638 16 7 -0.5897 -8.5711 -1.6863 17 7 -0.0025 -7.5540 -2.2134 18 7 0.4745 -6.7292 -1.1876 19 6 1.1563 -5.5477 -1.1699 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 1.4226 -5.1070 2.1559 26 1 0.1902 -7.2243 2.1512 27 1 -0.9651 -9.2250 0.3209 28 1 1.4294 -5.0729 -2.1007 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261233614.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:25 Heat of formation + Delta-G solvation = 85.880368 kcal Electronic energy + Delta-G solvation = -13471.887653 eV Core-core repulsion = 11102.892642 eV Total energy + Delta-G solvation = -2368.995011 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.52751 -39.48348 -35.92985 -34.33005 -33.99557 -31.21454 -29.92986 -27.24472 -24.86550 -24.32522 -23.08099 -22.16423 -18.92329 -18.53564 -17.99031 -17.10752 -16.53489 -16.39688 -15.78994 -15.11438 -14.62542 -14.48944 -13.81736 -13.59996 -13.34098 -12.86764 -12.79396 -12.45591 -12.39417 -12.28506 -11.87977 -11.74119 -11.66246 -11.23533 -10.54588 -10.38647 -8.93917 -8.19094 -6.29958 -0.26655 -0.22449 1.14625 1.43452 1.43996 1.51383 1.54720 2.29410 2.43206 3.15712 3.21329 3.52367 3.67513 3.85634 3.91846 4.15088 4.39332 4.59905 4.72205 4.81526 4.98673 5.11737 5.16940 5.22970 5.44332 5.53179 5.67455 5.75393 5.84983 6.22151 6.88087 7.15098 7.40159 8.92237 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.062109 B = 0.005713 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.713124 B = 4900.272576 C = 5021.882373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.031 3.969 10 C -0.058 4.058 11 C -0.069 4.069 12 C -0.077 4.077 13 C -0.080 4.080 14 C 0.047 3.953 15 C -0.071 4.071 16 N -0.255 5.255 17 N -0.179 5.179 18 N -0.277 5.277 19 C 0.058 3.942 20 H 0.262 0.738 21 H 0.001 0.999 22 H -0.013 1.013 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.175 0.825 26 H 0.202 0.798 27 H 0.231 0.769 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -11.814 5.828 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.006 4.006 10 C -0.096 4.096 11 C -0.074 4.074 12 C -0.101 4.101 13 C -0.101 4.101 14 C -0.079 4.079 15 C -0.241 4.241 16 N -0.110 5.110 17 N -0.151 5.151 18 N -0.047 5.047 19 C -0.068 4.068 20 H 0.071 0.929 21 H 0.019 0.981 22 H 0.005 0.995 23 H 0.093 0.907 24 H 0.111 0.889 25 H 0.193 0.807 26 H 0.219 0.781 27 H 0.247 0.753 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.997 -12.073 4.007 13.069 hybrid contribution 0.099 1.354 0.532 1.458 sum 3.095 -10.719 4.539 12.045 Atomic orbital electron populations 1.70096 1.07860 1.27697 1.51803 1.25937 0.95627 1.03301 0.94904 0.85503 0.78896 0.78734 0.78266 1.20294 1.21236 1.18225 1.21706 0.93887 0.91907 1.50219 0.91310 1.18988 0.94101 0.92201 0.95311 1.20596 0.97126 0.88006 1.03863 1.20166 0.98232 0.97069 0.91896 1.21705 0.95250 0.94197 0.98914 1.21121 0.97754 0.95420 0.95784 1.21004 1.01737 0.96397 0.88719 1.23872 1.08921 0.99935 0.91348 1.73569 1.11964 1.14705 1.10758 1.82220 1.24148 1.01160 1.07591 1.48181 1.32592 1.15751 1.08165 1.21602 0.98224 0.85041 1.01956 0.92919 0.98085 0.99481 0.90715 0.88920 0.80726 0.78143 0.75293 0.81050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.55 15 2 C 0.00 0.01 5.46 84.66 0.46 0.47 15 3 Si 0.96 42.11 29.54 68.60 2.03 44.14 15 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 15 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 7 C -0.54 -28.09 9.11 25.60 0.23 -27.86 15 8 H 0.07 3.36 7.74 -2.91 -0.02 3.33 15 9 C 0.03 1.47 4.95 29.85 0.15 1.62 15 10 C -0.06 -1.94 5.27 29.85 0.16 -1.79 15 11 C -0.07 -2.03 5.10 -20.06 -0.10 -2.13 15 12 C -0.08 -1.76 9.73 22.32 0.22 -1.54 15 13 C -0.08 -1.59 10.11 22.37 0.23 -1.37 15 14 C 0.05 1.28 6.88 38.93 0.27 1.55 15 15 C -0.07 -1.85 12.02 84.64 1.02 -0.83 15 16 N -0.26 -8.70 12.24 -57.05 -0.70 -9.39 15 17 N -0.18 -6.73 13.86 37.02 0.51 -6.22 15 18 N -0.28 -9.28 3.95 -188.05 -0.74 -10.02 15 19 C 0.06 1.84 10.82 83.22 0.90 2.74 15 20 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 21 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 22 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 23 H 0.07 2.41 8.07 -2.39 -0.02 2.39 15 24 H 0.09 2.77 8.08 -2.39 -0.02 2.75 15 25 H 0.18 3.05 8.06 -2.91 -0.02 3.03 15 26 H 0.20 1.99 8.06 -2.91 -0.02 1.97 15 27 H 0.23 3.57 8.06 -2.91 -0.02 3.54 15 28 H 0.17 5.24 8.06 -2.91 -0.02 5.21 15 Total: -1.00 -68.83 254.37 6.07 -62.77 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.16 Total: 2.42 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.53 Total: -29.14 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -0.64 Total: -80.18 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -68.83 6.07 -62.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233614.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.646 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds