Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00061 * 2 1 4 4 H 1.48500 * 109.47108 * 240.00208 * 3 2 1 5 5 H 1.48503 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47088 * 119.99731 * 3 2 1 7 7 C 1.37870 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46754 * 180.02562 * 10 9 7 12 12 C 1.38537 * 126.19758 * 265.02800 * 11 10 9 13 13 N 1.31619 * 109.04634 * 179.97438 * 12 11 10 14 14 N 1.39734 * 108.86188 * 0.03936 * 13 12 11 15 15 C 1.36737 * 133.61278 * 179.97438 * 14 13 12 16 16 C 1.34950 * 119.76065 * 179.97438 * 15 14 13 17 17 N 1.33559 * 121.37999 * 359.97438 * 16 15 14 18 18 C 1.31254 * 121.26250 * 0.02562 * 17 16 15 19 19 C 1.37475 * 107.50705 * 359.97081 * 14 13 12 20 20 H 0.96999 * 119.99988 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46647 * 60.00156 * 9 7 2 22 22 H 1.09001 * 109.46785 * 300.00365 * 9 7 2 23 23 H 1.09002 * 109.47243 * 60.00488 * 10 9 7 24 24 H 1.08995 * 109.47120 * 299.99734 * 10 9 7 25 25 H 1.08006 * 125.47873 * 359.97111 * 12 11 10 26 26 H 1.08001 * 120.11969 * 0.02562 * 15 14 13 27 27 H 1.08004 * 119.30709 * 180.02562 * 16 15 14 28 28 H 1.08005 * 120.20334 * 179.72936 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 6 1.1663 -5.7245 1.1123 13 7 0.5080 -6.7964 0.7251 14 7 0.3832 -6.7719 -0.6664 15 6 -0.1937 -7.6135 -1.5767 16 6 -0.1503 -7.3101 -2.8909 17 7 0.4467 -6.1985 -3.3288 18 6 1.0152 -5.3577 -2.4966 19 6 0.9987 -5.6280 -1.1167 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8895 24 1 2.8720 -3.6043 -0.8905 25 1 1.4131 -5.4753 2.1338 26 1 -0.6830 -8.5174 -1.2450 27 1 -0.6087 -7.9799 -3.6035 28 1 1.4970 -4.4660 -2.8697 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261238178.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 104.415301 kcal Electronic energy + Delta-G solvation = -13638.028420 eV Core-core repulsion = 11269.837144 eV Total energy + Delta-G solvation = -2368.191276 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03726 -38.07750 -34.51495 -32.98829 -31.42839 -30.74399 -28.13643 -24.98784 -24.45808 -22.89075 -21.49910 -19.87306 -17.74954 -17.14342 -16.32764 -15.59803 -15.34565 -14.86544 -14.45930 -13.65424 -13.34526 -12.77382 -12.61627 -12.45888 -12.04742 -11.27443 -11.00145 -10.84298 -10.57341 -10.42407 -9.83761 -9.74532 -9.55569 -9.39386 -9.11135 -8.34254 -7.32747 -5.99013 -4.02499 0.70395 1.18912 2.28819 2.92347 3.34121 3.38975 3.40932 3.62970 4.28399 4.41027 4.47105 4.56618 5.07797 5.17631 5.36609 5.44666 5.59302 5.72934 5.95408 6.33903 6.56422 6.60304 6.73771 6.80923 7.08136 7.63805 7.68549 7.80320 7.83344 8.00794 8.40627 9.04814 9.61910 11.11843 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044999 B = 0.006763 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.085105 B = 4138.901197 C = 4456.217825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.042 4.042 11 C -0.170 4.170 12 C 0.068 3.932 13 N -0.309 5.309 14 N -0.269 5.269 15 C 0.058 3.942 16 C 0.011 3.989 17 N -0.469 5.469 18 C 0.183 3.817 19 C 0.020 3.980 20 H 0.261 0.739 21 H 0.015 0.985 22 H 0.016 0.984 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.195 0.805 26 H 0.170 0.830 27 H 0.175 0.825 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -12.894 -2.830 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.081 4.081 11 C -0.184 4.184 12 C -0.107 4.107 13 N -0.136 5.136 14 N -0.040 5.040 15 C -0.069 4.069 16 C -0.128 4.128 17 N -0.180 5.180 18 C 0.001 3.999 19 C -0.099 4.099 20 H 0.071 0.929 21 H 0.034 0.966 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.212 0.788 26 H 0.187 0.813 27 H 0.192 0.808 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.445 -13.913 -3.246 14.294 hybrid contribution 0.587 1.415 0.741 1.702 sum 1.032 -12.498 -2.505 12.788 Atomic orbital electron populations 1.69961 1.06093 1.26719 1.50606 1.25014 0.94797 0.99216 0.95293 0.86671 0.79578 0.83187 0.78631 1.20198 1.21377 1.20240 1.21216 0.93043 0.90935 1.50903 0.92536 1.19093 0.93746 0.90528 0.97450 1.20229 0.97548 0.88878 1.01423 1.20644 1.07840 1.00744 0.89220 1.23871 0.95265 0.91005 1.00520 1.77768 1.26953 1.24203 0.84646 1.46256 1.35757 1.15561 1.06431 1.22334 0.99418 0.96709 0.88475 1.22129 1.01940 0.96658 0.92097 1.68182 1.08624 1.03034 1.38174 1.23118 0.93318 0.97799 0.85669 1.20390 1.02192 0.90715 0.96565 0.92947 0.96640 0.96546 0.91736 0.92165 0.78823 0.81311 0.80752 0.79752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.03 0.73 4.96 -27.88 -0.14 0.59 15 10 C -0.04 -0.83 5.65 -27.88 -0.16 -0.99 15 11 C -0.17 -3.09 5.43 -104.33 -0.57 -3.66 15 12 C 0.07 1.14 11.87 -17.53 -0.21 0.94 15 13 N -0.31 -5.35 12.68 30.48 0.39 -4.97 15 14 N -0.27 -4.46 3.96 -10.67 -0.04 -4.50 15 15 C 0.06 0.74 11.26 -16.53 -0.19 0.55 15 16 C 0.01 0.14 11.06 -17.97 -0.20 -0.06 15 17 N -0.47 -6.99 10.44 -13.18 -0.14 -7.12 15 18 C 0.18 2.91 11.33 -16.90 -0.19 2.72 15 19 C 0.02 0.35 6.79 -84.26 -0.57 -0.22 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 25 H 0.20 2.64 8.06 -52.48 -0.42 2.21 15 26 H 0.17 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.18 1.41 8.06 -52.48 -0.42 0.99 15 28 H 0.19 2.65 8.06 -52.48 -0.42 2.23 15 LS Contribution 254.98 15.07 3.84 3.84 Total: -1.00 -32.30 254.98 -5.79 -38.09 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -2.92 Total: -2.45 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.63 Total: -13.19 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.94 Total: -42.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.30 -5.79 -38.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238178.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.501 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds