Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00061 * 2 1 4 4 H 1.48500 * 109.47108 * 240.00208 * 3 2 1 5 5 H 1.48503 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47088 * 119.99731 * 3 2 1 7 7 C 1.37870 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46754 * 180.02562 * 10 9 7 12 12 C 1.38537 * 126.19758 * 265.02800 * 11 10 9 13 13 N 1.31619 * 109.04634 * 179.97438 * 12 11 10 14 14 N 1.39734 * 108.86188 * 0.03936 * 13 12 11 15 15 C 1.36737 * 133.61278 * 179.97438 * 14 13 12 16 16 C 1.34950 * 119.76065 * 179.97438 * 15 14 13 17 17 N 1.33559 * 121.37999 * 359.97438 * 16 15 14 18 18 C 1.31254 * 121.26250 * 0.02562 * 17 16 15 19 19 C 1.37475 * 107.50705 * 359.97081 * 14 13 12 20 20 H 0.96999 * 119.99988 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46647 * 60.00156 * 9 7 2 22 22 H 1.09001 * 109.46785 * 300.00365 * 9 7 2 23 23 H 1.09002 * 109.47243 * 60.00488 * 10 9 7 24 24 H 1.08995 * 109.47120 * 299.99734 * 10 9 7 25 25 H 1.08006 * 125.47873 * 359.97111 * 12 11 10 26 26 H 1.08001 * 120.11969 * 0.02562 * 15 14 13 27 27 H 1.08004 * 119.30709 * 180.02562 * 16 15 14 28 28 H 1.08005 * 120.20334 * 179.72936 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 6 1.1663 -5.7245 1.1123 13 7 0.5080 -6.7964 0.7251 14 7 0.3832 -6.7719 -0.6664 15 6 -0.1937 -7.6135 -1.5767 16 6 -0.1503 -7.3101 -2.8909 17 7 0.4467 -6.1985 -3.3288 18 6 1.0152 -5.3577 -2.4966 19 6 0.9987 -5.6280 -1.1167 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8895 24 1 2.8720 -3.6043 -0.8905 25 1 1.4131 -5.4753 2.1338 26 1 -0.6830 -8.5174 -1.2450 27 1 -0.6087 -7.9799 -3.6035 28 1 1.4970 -4.4660 -2.8697 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261238178.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 83.722631 kcal Electronic energy + Delta-G solvation = -13638.925722 eV Core-core repulsion = 11269.837144 eV Total energy + Delta-G solvation = -2369.088577 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.27048 -39.25884 -36.17339 -34.64790 -33.03123 -32.01242 -29.69918 -26.76702 -25.62796 -24.24846 -23.16862 -21.30688 -19.01298 -18.39358 -18.25938 -16.88951 -16.54552 -16.41898 -15.98071 -15.02115 -14.81683 -14.31246 -14.03751 -13.89826 -13.66899 -13.01815 -12.78084 -12.56834 -12.17951 -11.94604 -11.52767 -11.32203 -11.13762 -10.92372 -10.66857 -10.48657 -8.59898 -8.13017 -6.25024 -0.44669 -0.03513 1.13155 1.45095 1.47835 1.55217 1.63840 2.44550 2.48085 3.14340 3.19872 3.34292 3.43578 3.91823 4.13117 4.25592 4.46090 4.58406 4.60515 4.96963 5.03737 5.16251 5.20164 5.51098 5.58735 5.62429 5.80921 5.91640 6.29619 6.39524 6.67332 6.93056 7.44629 8.97610 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044999 B = 0.006763 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.085105 B = 4138.901197 C = 4456.217825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.037 3.963 10 C -0.023 4.023 11 C -0.206 4.206 12 C 0.069 3.931 13 N -0.328 5.328 14 N -0.272 5.272 15 C 0.055 3.945 16 C 0.016 3.984 17 N -0.470 5.470 18 C 0.158 3.842 19 C 0.016 3.984 20 H 0.261 0.739 21 H -0.013 1.013 22 H -0.014 1.014 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.218 0.782 26 H 0.210 0.790 27 H 0.222 0.778 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 -13.936 -3.458 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.000 4.000 10 C -0.062 4.062 11 C -0.221 4.221 12 C -0.105 4.105 13 N -0.155 5.155 14 N -0.043 5.043 15 C -0.071 4.071 16 C -0.124 4.124 17 N -0.181 5.181 18 C -0.023 4.023 19 C -0.104 4.104 20 H 0.070 0.930 21 H 0.005 0.995 22 H 0.004 0.996 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.234 0.766 26 H 0.227 0.773 27 H 0.239 0.761 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.977 -14.960 -3.866 15.482 hybrid contribution 0.327 1.579 0.820 1.810 sum 1.304 -13.380 -3.045 13.784 Atomic orbital electron populations 1.70115 1.07960 1.27635 1.52021 1.25964 0.95618 1.03319 0.94887 0.85535 0.78226 0.78190 0.79299 1.18989 1.21416 1.19073 1.21710 0.93812 0.92011 1.50047 0.91438 1.18936 0.94102 0.92483 0.94518 1.19881 0.96318 0.87754 1.02230 1.20472 1.10261 1.01016 0.90345 1.24235 0.94448 0.90521 1.01313 1.77722 1.27974 1.24644 0.85144 1.46607 1.35311 1.15711 1.06710 1.23199 0.98438 0.97306 0.88206 1.22954 1.00540 0.95985 0.92885 1.68207 1.07962 1.03621 1.38328 1.23197 0.94971 0.98809 0.85288 1.20596 1.01750 0.91030 0.97043 0.93007 0.99491 0.99593 0.90754 0.91404 0.76610 0.77318 0.76129 0.79461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 13.29 21.44 0.28 -56.93 15 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 15 3 Si 0.96 43.66 29.54 68.60 2.03 45.69 15 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 15 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 15 9 C 0.04 1.92 4.96 29.85 0.15 2.07 15 10 C -0.02 -0.93 5.65 29.85 0.17 -0.76 15 11 C -0.21 -7.59 5.43 -19.68 -0.11 -7.70 15 12 C 0.07 2.29 11.87 84.80 1.01 3.30 15 13 N -0.33 -11.08 12.68 -57.47 -0.73 -11.81 15 14 N -0.27 -8.69 3.96 -187.67 -0.74 -9.43 15 15 C 0.06 1.25 11.26 83.17 0.94 2.18 15 16 C 0.02 0.34 11.06 83.67 0.93 1.27 15 17 N -0.47 -13.18 10.44 -195.61 -2.04 -15.22 15 18 C 0.16 4.99 11.33 85.36 0.97 5.96 15 19 C 0.02 0.55 6.79 38.96 0.26 0.81 15 20 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 21 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 15 22 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 15 23 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 25 H 0.22 5.79 8.06 -2.91 -0.02 5.77 15 26 H 0.21 2.90 8.06 -2.91 -0.02 2.88 15 27 H 0.22 2.45 8.06 -2.91 -0.02 2.43 15 28 H 0.19 5.55 8.06 -2.91 -0.02 5.52 15 Total: -1.00 -70.43 254.98 4.96 -65.47 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.16 Total: 4.20 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 5.00 Total: -21.96 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.23 Total: -93.39 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.43 4.96 -65.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238178.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.190 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds