Wall clock time and date at job start Mon Mar 30 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46896 * 2 1 4 4 C 1.50696 * 109.47034 * 240.00324 * 2 1 3 5 5 H 1.08008 * 119.99760 * 239.99544 * 4 2 1 6 6 C 1.37873 * 120.00321 * 59.99757 * 4 2 1 7 7 N 1.31517 * 120.00109 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00149 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46998 * 89.99555 * 8 6 4 10 10 H 1.48491 * 109.46921 * 209.99921 * 8 6 4 11 11 H 1.48503 * 109.46786 * 329.99945 * 8 6 4 12 12 C 1.50697 * 109.47453 * 119.99618 * 2 1 3 13 13 C 1.34941 * 119.73316 * 85.02464 * 12 2 1 14 14 C 1.40565 * 120.46961 * 179.97438 * 13 12 2 15 15 C 1.36034 * 119.69092 * 0.02562 * 14 13 12 16 16 C 1.40766 * 119.14409 * 359.96241 * 15 14 13 17 17 C 1.38445 * 133.91750 * 180.02562 * 16 15 14 18 18 N 1.32503 * 108.33879 * 180.02562 * 17 16 15 19 19 N 1.28734 * 110.65417 * 0.02562 * 18 17 16 20 20 N 1.36418 * 119.73853 * 265.00415 * 12 2 1 21 21 H 1.09002 * 109.47010 * 299.99935 * 1 2 3 22 22 H 1.08996 * 109.47367 * 60.00018 * 1 2 3 23 23 H 1.08997 * 109.46944 * 180.02562 * 1 2 3 24 24 H 0.96995 * 120.00276 * 180.02562 * 7 6 4 25 25 H 1.07995 * 119.76395 * 0.02562 * 13 12 2 26 26 H 1.07991 * 120.15380 * 179.97438 * 14 13 12 27 27 H 1.08002 * 120.42134 * 180.02562 * 15 14 13 28 28 H 1.08003 * 125.83335 * 359.76568 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4118 10 1 2.4864 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0324 -0.7103 1.2305 13 6 2.1597 -2.0537 1.2227 14 6 2.6273 -2.7319 2.3616 15 6 2.9529 -2.0277 3.4789 16 6 2.8147 -0.6268 3.4709 17 6 3.0487 0.3666 4.4063 18 7 2.7426 1.5342 3.8599 19 7 2.3303 1.3756 2.6507 20 7 2.3552 0.0099 2.3431 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7080 1.1609 -3.4843 25 1 1.9013 -2.6115 0.3348 26 1 2.7268 -3.8072 2.3498 27 1 3.3137 -2.5368 4.3604 28 1 3.4141 0.2153 5.4113 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261238946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:06 Heat of formation + Delta-G solvation = 112.468908 kcal Electronic energy + Delta-G solvation = -14128.665941 eV Core-core repulsion = 11760.823896 eV Total energy + Delta-G solvation = -2367.842045 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.04229 -37.89296 -34.72809 -32.70168 -31.35450 -29.85032 -27.98309 -25.36671 -23.87626 -22.92366 -22.09880 -19.85244 -17.56070 -16.34792 -16.09180 -15.55084 -15.49385 -14.78590 -14.12620 -13.51493 -12.80149 -12.44256 -12.21233 -11.82959 -11.45825 -11.15420 -11.03029 -10.95790 -10.80858 -10.68272 -10.31160 -10.19295 -9.88918 -9.17118 -9.10662 -8.56058 -7.34940 -6.19757 -4.30095 1.17431 1.30837 2.68403 3.03390 3.19865 3.27850 3.29739 3.74002 4.26923 4.69073 4.89621 5.11792 5.17293 5.23265 5.36248 5.49240 5.99607 6.08963 6.42368 6.48540 6.56060 6.59672 6.76003 6.88417 6.98248 7.24001 7.50761 7.68602 7.86388 8.08935 8.68866 8.70829 9.36076 10.86582 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040182 B = 0.009163 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.658970 B = 3055.169773 C = 3439.913355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.075 3.925 3 H 0.055 0.945 4 C -0.525 4.525 5 H 0.066 0.934 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.181 3.819 13 C -0.157 4.157 14 C -0.067 4.067 15 C -0.139 4.139 16 C 0.066 3.934 17 C -0.101 4.101 18 N -0.230 5.230 19 N -0.112 5.112 20 N -0.272 5.272 21 H 0.011 0.989 22 H 0.095 0.905 23 H 0.033 0.967 24 H 0.265 0.735 25 H 0.166 0.834 26 H 0.139 0.861 27 H 0.144 0.856 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 -7.883 8.138 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 H 0.073 0.927 4 C -0.563 4.563 5 H 0.085 0.915 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.073 3.927 13 C -0.179 4.179 14 C -0.091 4.091 15 C -0.160 4.160 16 C -0.059 4.059 17 C -0.267 4.267 18 N -0.088 5.088 19 N -0.085 5.085 20 N -0.042 5.042 21 H 0.031 0.969 22 H 0.114 0.886 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.183 0.817 26 H 0.156 0.844 27 H 0.162 0.838 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.775 -6.034 7.519 9.802 hybrid contribution 0.576 -1.503 -0.462 1.675 sum 2.352 -7.537 7.057 10.589 Atomic orbital electron populations 1.21766 0.95943 0.99756 1.01206 1.18085 0.93673 0.96788 0.85864 0.92695 1.21073 1.32676 1.13187 0.89379 0.91545 1.24953 0.94675 0.94830 0.99149 1.69882 1.35649 1.22323 1.24014 0.86460 0.79288 0.79354 0.82190 1.20388 1.21018 1.19722 1.21607 0.92592 0.91578 0.86886 1.21036 1.04208 0.92309 1.00340 1.21360 0.94859 1.00672 0.92206 1.20360 1.05750 0.89396 1.00463 1.20373 1.01490 0.94912 0.89088 1.22977 1.15679 0.86382 1.01700 1.73633 1.08036 1.24652 1.02506 1.82332 1.28904 0.88445 1.08829 1.48282 1.37413 1.08579 1.09934 0.96946 0.88621 0.94821 0.92484 0.81699 0.84365 0.83780 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.95 37.16 0.33 -2.71 15 2 C 0.08 1.84 2.55 -92.93 -0.24 1.60 15 3 H 0.06 1.54 8.01 -51.93 -0.42 1.12 15 4 C -0.53 -13.31 7.86 -34.44 -0.27 -13.58 15 5 H 0.07 1.59 6.32 -52.48 -0.33 1.26 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 15 7 N -0.88 -24.10 11.32 55.43 0.63 -23.47 15 8 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 15 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 12 C 0.18 3.86 5.83 -81.72 -0.48 3.38 15 13 C -0.16 -2.76 8.79 -39.88 -0.35 -3.11 15 14 C -0.07 -0.92 10.07 -39.50 -0.40 -1.32 15 15 C -0.14 -1.91 10.11 -39.42 -0.40 -2.31 15 16 C 0.07 1.18 6.88 -84.33 -0.58 0.60 15 17 C -0.10 -1.72 12.02 -17.19 -0.21 -1.93 15 18 N -0.23 -4.75 12.24 30.62 0.37 -4.38 15 19 N -0.11 -2.58 13.62 60.35 0.82 -1.76 15 20 N -0.27 -5.82 3.94 -7.09 -0.03 -5.84 15 21 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 15 22 H 0.10 2.46 6.07 -51.93 -0.32 2.14 15 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 25 H 0.17 2.81 6.63 -52.49 -0.35 2.47 15 26 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 27 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 28 H 0.18 2.26 8.06 -52.48 -0.42 1.84 15 LS Contribution 246.15 15.07 3.71 3.71 Total: -1.00 -29.43 246.15 -4.85 -34.29 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -2.66 Total: 0.24 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.68 Total: -17.73 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 1.80 Total: -35.45 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.43 -4.85 -34.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.756 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds