Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46896 * 2 1 4 4 C 1.50696 * 109.47034 * 240.00324 * 2 1 3 5 5 H 1.08008 * 119.99760 * 239.99544 * 4 2 1 6 6 C 1.37873 * 120.00321 * 59.99757 * 4 2 1 7 7 N 1.31517 * 120.00109 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00149 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46998 * 89.99555 * 8 6 4 10 10 H 1.48491 * 109.46921 * 209.99921 * 8 6 4 11 11 H 1.48503 * 109.46786 * 329.99945 * 8 6 4 12 12 C 1.50697 * 109.47453 * 119.99618 * 2 1 3 13 13 C 1.34941 * 119.73316 * 85.02464 * 12 2 1 14 14 C 1.40565 * 120.46961 * 179.97438 * 13 12 2 15 15 C 1.36034 * 119.69092 * 0.02562 * 14 13 12 16 16 C 1.40766 * 119.14409 * 359.96241 * 15 14 13 17 17 C 1.38445 * 133.91750 * 180.02562 * 16 15 14 18 18 N 1.32503 * 108.33879 * 180.02562 * 17 16 15 19 19 N 1.28734 * 110.65417 * 0.02562 * 18 17 16 20 20 N 1.36418 * 119.73853 * 265.00415 * 12 2 1 21 21 H 1.09002 * 109.47010 * 299.99935 * 1 2 3 22 22 H 1.08996 * 109.47367 * 60.00018 * 1 2 3 23 23 H 1.08997 * 109.46944 * 180.02562 * 1 2 3 24 24 H 0.96995 * 120.00276 * 180.02562 * 7 6 4 25 25 H 1.07995 * 119.76395 * 0.02562 * 13 12 2 26 26 H 1.07991 * 120.15380 * 179.97438 * 14 13 12 27 27 H 1.08002 * 120.42134 * 180.02562 * 15 14 13 28 28 H 1.08003 * 125.83335 * 359.76568 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4118 10 1 2.4864 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0324 -0.7103 1.2305 13 6 2.1597 -2.0537 1.2227 14 6 2.6273 -2.7319 2.3616 15 6 2.9529 -2.0277 3.4789 16 6 2.8147 -0.6268 3.4709 17 6 3.0487 0.3666 4.4063 18 7 2.7426 1.5342 3.8599 19 7 2.3303 1.3756 2.6507 20 7 2.3552 0.0099 2.3431 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7080 1.1609 -3.4843 25 1 1.9013 -2.6115 0.3348 26 1 2.7268 -3.8072 2.3498 27 1 3.3137 -2.5368 4.3604 28 1 3.4141 0.2153 5.4113 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261238946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = 93.374987 kcal Electronic energy + Delta-G solvation = -14129.493916 eV Core-core repulsion = 11760.823896 eV Total energy + Delta-G solvation = -2368.670020 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.44704 -39.33217 -36.41578 -34.23553 -32.99327 -31.41238 -29.44970 -27.33975 -25.32130 -24.35290 -23.63599 -21.47563 -19.02549 -18.08972 -17.59158 -17.00965 -16.88990 -16.38521 -15.50995 -15.08977 -14.62681 -14.09292 -13.56979 -13.38346 -13.08720 -12.82009 -12.65232 -12.58621 -12.41019 -12.21998 -12.13184 -11.65246 -11.59893 -11.07759 -10.59087 -10.48968 -8.76549 -8.16782 -6.34245 -0.09018 -0.07106 1.28947 1.45321 1.46983 1.56565 1.62305 2.39863 2.47549 3.13584 3.37242 3.68483 3.78446 3.99365 4.22258 4.28187 4.61895 4.72702 4.78868 4.95807 5.01023 5.15802 5.24765 5.31849 5.38752 5.57962 5.73616 5.81420 5.97448 6.18897 6.73800 7.26779 7.36068 8.89942 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040182 B = 0.009163 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.658970 B = 3055.169773 C = 3439.913355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.080 3.920 3 H -0.001 1.001 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.292 1.292 11 H -0.262 1.262 12 C 0.125 3.875 13 C -0.132 4.132 14 C -0.061 4.061 15 C -0.107 4.107 16 C 0.049 3.951 17 C -0.084 4.084 18 N -0.260 5.260 19 N -0.189 5.189 20 N -0.280 5.280 21 H 0.006 0.994 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.264 0.736 25 H 0.170 0.830 26 H 0.195 0.805 27 H 0.202 0.798 28 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -11.921 9.711 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 H 0.017 0.983 4 C -0.569 4.569 5 H 0.099 0.901 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.218 1.218 11 H -0.186 1.186 12 C 0.017 3.983 13 C -0.155 4.155 14 C -0.085 4.085 15 C -0.128 4.128 16 C -0.076 4.076 17 C -0.253 4.253 18 N -0.115 5.115 19 N -0.161 5.161 20 N -0.050 5.050 21 H 0.025 0.975 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.188 0.812 26 H 0.213 0.787 27 H 0.219 0.781 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.141 -10.041 9.091 13.905 hybrid contribution 0.203 -0.378 -0.798 0.906 sum 3.344 -10.420 8.294 13.731 Atomic orbital electron populations 1.21588 0.96243 1.00093 0.99522 1.17736 0.93690 0.94294 0.88246 0.98319 1.21455 1.32283 1.13339 0.89817 0.90095 1.25867 0.94866 0.95480 1.02429 1.70055 1.37210 1.24083 1.24458 0.85390 0.79208 0.78120 0.77986 1.19132 1.21775 1.18634 1.21234 0.97632 0.92812 0.86630 1.21354 1.01382 0.90664 1.02068 1.21883 0.93264 1.03179 0.90153 1.21139 1.02202 0.87176 1.02251 1.21237 1.01416 0.96978 0.87971 1.23893 1.13227 0.85055 1.03170 1.73588 1.09127 1.26482 1.02351 1.82322 1.33223 0.90159 1.10365 1.48270 1.37429 1.08496 1.10837 0.97454 0.91326 0.93192 0.92726 0.81229 0.78741 0.78079 0.75224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.95 71.98 0.64 -5.15 15 2 C 0.08 4.10 2.55 -12.29 -0.03 4.07 15 3 H 0.00 -0.08 8.01 -2.38 -0.02 -0.10 15 4 C -0.53 -27.40 7.86 25.60 0.20 -27.20 15 5 H 0.08 3.81 6.32 -2.91 -0.02 3.80 15 6 C 0.01 0.69 5.30 84.65 0.45 1.14 15 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 15 8 Si 0.97 41.11 29.54 68.60 2.03 43.14 15 9 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 12 C 0.12 5.36 5.83 41.09 0.24 5.59 15 13 C -0.13 -4.30 8.79 22.08 0.19 -4.11 15 14 C -0.06 -1.31 10.07 22.32 0.22 -1.09 15 15 C -0.11 -2.30 10.11 22.38 0.23 -2.07 15 16 C 0.05 1.61 6.88 38.94 0.27 1.88 15 17 C -0.08 -2.67 12.02 84.64 1.02 -1.66 15 18 N -0.26 -10.99 12.24 -57.05 -0.70 -11.69 15 19 N -0.19 -9.21 13.62 37.02 0.50 -8.70 15 20 N -0.28 -12.12 3.94 -176.35 -0.70 -12.82 15 21 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 22 H 0.07 3.76 6.07 -2.39 -0.01 3.74 15 23 H 0.05 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 25 H 0.17 5.27 6.63 -2.91 -0.02 5.25 15 26 H 0.20 2.09 8.06 -2.92 -0.02 2.07 15 27 H 0.20 2.09 8.06 -2.91 -0.02 2.07 15 28 H 0.23 4.65 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -71.31 246.15 5.98 -65.33 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.17 Total: 5.73 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 3.43 Total: -28.59 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -0.65 Total: -85.61 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -71.31 5.98 -65.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.707 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds