Wall clock time and date at job start Mon Mar 30 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46493 * 2 1 4 4 C 1.50693 * 109.47425 * 119.99828 * 2 1 3 5 5 H 1.08001 * 119.99415 * 119.99999 * 4 2 1 6 6 C 1.37881 * 120.00372 * 300.00621 * 4 2 1 7 7 N 1.31509 * 119.99866 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99893 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47196 * 90.00019 * 8 6 4 10 10 H 1.48502 * 109.47185 * 210.00273 * 8 6 4 11 11 H 1.48505 * 109.47212 * 330.00099 * 8 6 4 12 12 C 1.50696 * 109.47071 * 240.00857 * 2 1 3 13 13 C 1.38627 * 120.25997 * 299.99305 * 12 2 1 14 14 N 1.31516 * 121.41319 * 180.02562 * 13 12 2 15 15 C 1.33119 * 121.52817 * 359.97438 * 14 13 12 16 16 N 1.35672 * 133.32016 * 179.97438 * 15 14 13 17 17 C 1.30204 * 109.74620 * 179.97438 * 16 15 14 18 18 N 1.35897 * 110.10950 * 0.02562 * 17 16 15 19 19 H 0.96998 * 126.38828 * 179.97438 * 18 17 16 20 20 C 1.37977 * 107.22048 * 0.02562 * 18 17 16 21 21 C 1.38412 * 120.27152 * 119.97650 * 12 2 1 22 22 H 1.09004 * 109.47493 * 299.99613 * 1 2 3 23 23 H 1.08998 * 109.47793 * 59.99745 * 1 2 3 24 24 H 1.09002 * 109.47183 * 180.02562 * 1 2 3 25 25 H 0.97005 * 120.00032 * 179.97438 * 7 6 4 26 26 H 1.08001 * 119.29466 * 359.97438 * 13 12 2 27 27 H 1.08001 * 124.94538 * 179.73557 * 17 16 15 28 28 H 1.07995 * 120.89757 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5564 8 14 0.6257 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9771 1.9952 3.9072 11 1 0.8489 2.1773 1.4924 12 6 2.0323 -0.7102 -1.2305 13 6 1.7008 -2.0373 -1.4554 14 7 2.1270 -2.6792 -2.5212 15 6 2.8947 -2.0842 -3.4315 16 7 3.4579 -2.5041 -4.5922 17 6 4.1317 -1.5295 -5.1320 18 7 4.0482 -0.4174 -4.3555 19 1 4.4610 0.4419 -4.5346 20 6 3.2676 -0.7390 -3.2641 21 6 2.8280 -0.0427 -2.1455 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.9033 -0.5281 4.4375 26 1 1.0799 -2.5555 -0.7396 27 1 4.6812 -1.5966 -6.0594 28 1 3.0997 0.9914 -1.9936 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261240378.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:01 Heat of formation + Delta-G solvation = 60.972067 kcal Electronic energy + Delta-G solvation = -13904.335292 eV Core-core repulsion = 11534.260176 eV Total energy + Delta-G solvation = -2370.075116 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.18147 -39.65961 -36.41772 -34.42963 -33.44491 -31.79333 -29.79236 -27.06390 -24.95706 -24.67402 -22.49971 -21.79932 -19.34737 -18.60407 -18.09784 -17.23272 -16.68839 -16.45581 -15.43065 -14.92918 -14.74673 -14.59649 -14.06824 -13.92720 -13.72378 -12.96676 -12.92121 -12.29205 -12.07141 -11.89206 -11.66163 -11.30626 -11.14707 -10.71028 -10.08999 -9.71824 -9.30173 -8.25312 -6.31192 -0.02844 0.33950 1.38155 1.41979 1.53000 1.81990 1.95591 2.36865 2.91162 2.97394 3.11224 3.59335 4.00225 4.10893 4.20958 4.30002 4.44463 4.61682 4.82894 4.85211 4.95726 5.14331 5.17558 5.28886 5.62548 5.66044 5.77329 6.31864 6.49600 6.69880 6.75460 7.17830 7.33829 8.91263 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.055444 B = 0.007666 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.894938 B = 3651.528264 C = 3757.184887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 H 0.048 0.952 4 C -0.512 4.512 5 H 0.031 0.969 6 C 0.014 3.986 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.303 1.303 11 H -0.238 1.238 12 C -0.085 4.085 13 C 0.122 3.878 14 N -0.487 5.487 15 C 0.196 3.804 16 N -0.543 5.543 17 C 0.306 3.694 18 N -0.580 5.580 19 H 0.446 0.554 20 C -0.005 4.005 21 C -0.072 4.072 22 H 0.038 0.962 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.266 0.734 26 H 0.157 0.843 27 H 0.283 0.717 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 7.465 -16.635 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.066 0.934 4 C -0.550 4.550 5 H 0.049 0.951 6 C -0.183 4.183 7 N -0.590 5.590 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.232 1.232 11 H -0.161 1.161 12 C -0.089 4.089 13 C -0.046 4.046 14 N -0.198 5.198 15 C -0.044 4.044 16 N -0.266 5.266 17 C 0.017 3.983 18 N -0.195 5.195 19 H 0.290 0.710 20 C -0.118 4.118 21 C -0.101 4.101 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.174 0.826 27 H 0.298 0.702 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.996 5.697 -16.961 18.003 hybrid contribution 0.151 2.024 1.258 2.388 sum 2.147 7.721 -15.703 17.630 Atomic orbital electron populations 1.22119 0.96396 1.01674 1.00004 1.18137 0.93428 0.95870 0.89346 0.93377 1.21139 1.31256 1.12461 0.90183 0.95101 1.25872 0.97177 1.00081 0.95179 1.70054 1.47618 1.42602 0.98702 0.85805 0.78997 0.79846 0.77474 1.19271 1.23164 1.16120 1.20837 0.96898 0.95073 0.96050 1.22556 0.97492 0.92137 0.92440 1.66758 1.11409 1.39064 1.02542 1.19935 1.00050 0.89387 0.95064 1.70185 1.16518 1.31715 1.08185 1.26633 0.95010 0.79029 0.97628 1.42913 1.43044 1.15860 1.17703 0.71021 1.19681 1.00903 0.97709 0.93511 1.20558 0.97685 1.01082 0.90812 0.94359 0.91782 0.92676 0.92522 0.82606 0.70219 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 8.49 71.98 0.61 -5.02 15 2 C 0.05 2.24 2.08 -12.29 -0.03 2.21 15 3 H 0.05 1.99 6.98 -2.38 -0.02 1.97 15 4 C -0.51 -28.05 8.83 25.60 0.23 -27.82 15 5 H 0.03 1.92 7.85 -2.91 -0.02 1.90 15 6 C 0.01 0.79 5.45 84.66 0.46 1.25 15 7 N -0.95 -58.39 13.96 21.45 0.30 -58.09 15 8 Si 0.95 42.58 24.37 68.60 1.67 44.25 15 9 H -0.27 -11.40 6.87 99.48 0.68 -10.72 15 10 H -0.30 -13.78 7.11 99.48 0.71 -13.07 15 11 H -0.24 -9.44 6.53 99.48 0.65 -8.79 15 12 C -0.08 -3.40 4.75 -19.73 -0.09 -3.50 15 13 C 0.12 5.23 9.87 84.83 0.84 6.07 15 14 N -0.49 -21.35 10.41 -193.97 -2.02 -23.37 15 15 C 0.20 7.60 8.37 134.31 1.12 8.72 15 16 N -0.54 -17.70 11.27 -196.99 -2.22 -19.92 15 17 C 0.31 5.67 12.97 180.07 2.33 8.01 15 18 N -0.58 -10.89 6.23 -191.10 -1.19 -12.08 15 19 H 0.45 4.08 8.96 -92.71 -0.83 3.25 15 20 C 0.00 -0.15 7.32 38.91 0.28 0.13 15 21 C -0.07 -2.40 9.81 22.47 0.22 -2.18 15 22 H 0.04 1.52 3.27 -2.38 -0.01 1.51 15 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.05 2.14 7.40 -2.39 -0.02 2.12 15 25 H 0.27 15.32 8.31 -92.70 -0.77 14.55 15 26 H 0.16 6.71 7.56 -2.91 -0.02 6.69 15 27 H 0.28 1.15 8.06 -2.91 -0.02 1.12 15 28 H 0.16 4.19 8.00 -2.91 -0.02 4.17 15 Total: -1.00 -77.39 239.20 2.81 -74.59 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.29 Total: 6.76 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 5.98 Total: -12.13 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -5.13 Total: -113.47 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.67 Total: 44.25 kcal Total: -77.39 2.81 -74.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240378.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.558 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds