Wall clock time and date at job start Mon Mar 30 2020 02:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32124 * 118.85683 * 2 1 4 4 C 1.32316 * 121.49209 * 180.02562 * 3 2 1 5 5 C 1.38921 * 118.73174 * 0.02562 * 4 3 2 6 6 N 1.37495 * 134.62728 * 180.02562 * 5 4 3 7 7 H 0.96998 * 125.08597 * 359.97438 * 6 5 4 8 8 C 1.36486 * 109.82732 * 179.75259 * 6 5 4 9 9 C 1.34587 * 109.97626 * 0.40607 * 8 6 5 10 10 C 1.50698 * 126.46824 * 179.86643 * 9 8 6 11 11 C 1.50706 * 109.47294 * 264.68685 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00200 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00139 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47145 * 89.99836 * 15 13 11 17 17 H 1.48496 * 109.47547 * 210.00333 * 15 13 11 18 18 H 1.48499 * 109.47030 * 330.00237 * 15 13 11 19 19 C 1.41115 * 118.14903 * 359.97438 * 5 4 3 20 20 N 1.31530 * 118.85238 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46864 * 269.97418 * 1 2 3 22 22 H 1.09002 * 109.47268 * 29.97464 * 1 2 3 23 23 H 1.08999 * 109.47430 * 149.98017 * 1 2 3 24 24 H 1.08001 * 120.63453 * 180.02562 * 4 3 2 25 25 H 1.08005 * 125.00804 * 180.25670 * 8 6 5 26 26 H 1.09001 * 109.46665 * 144.69067 * 10 9 8 27 27 H 1.09000 * 109.47722 * 24.69398 * 10 9 8 28 28 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1447 1.1572 0.0000 4 6 3.4664 1.2180 -0.0005 5 6 4.1896 0.0318 -0.0016 6 7 5.5279 -0.2835 -0.0019 7 1 6.2526 0.3611 -0.0017 8 6 5.6839 -1.6394 0.0024 9 6 4.4800 -2.2409 -0.0033 10 6 4.2203 -3.7253 -0.0040 11 6 4.0111 -4.1981 -1.4196 12 1 4.0617 -3.4941 -2.2370 13 6 3.7553 -5.5293 -1.6712 14 7 3.5732 -5.9420 -2.9065 15 14 3.6685 -6.7472 -0.2574 16 1 2.2718 -6.8291 0.2404 17 1 4.1051 -8.0857 -0.7294 18 1 4.5597 -6.2948 0.8410 19 6 3.4737 -1.1843 -0.0015 20 7 2.1417 -1.1520 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5141 24 1 3.9735 2.1716 -0.0001 25 1 6.6336 -2.1538 0.0071 26 1 3.3286 -3.9384 0.5856 27 1 5.0751 -4.2441 0.4298 28 1 3.3936 -6.8786 -3.0835 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241789.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:42 Heat of formation + Delta-G solvation = 48.769939 kcal Electronic energy + Delta-G solvation = -13778.589939 eV Core-core repulsion = 11407.985699 eV Total energy + Delta-G solvation = -2370.604240 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.78569 -39.75424 -35.58333 -34.56645 -32.90913 -32.65268 -29.30581 -28.55516 -25.22481 -24.43869 -23.23505 -20.47606 -19.41678 -18.92798 -17.74827 -17.37307 -16.47707 -16.20490 -15.45763 -14.84498 -14.67329 -14.56836 -14.01657 -13.80854 -13.26874 -13.04597 -12.99401 -12.48369 -12.32552 -12.19729 -11.94926 -11.76770 -11.54301 -10.74974 -10.03114 -9.59450 -8.87589 -8.25420 -6.28697 -0.06894 0.24149 1.38374 1.41277 1.52210 1.70493 2.07781 2.39262 2.91852 3.08621 3.16194 3.25271 3.60229 3.89801 4.11521 4.45043 4.56887 4.70423 4.76569 4.86022 5.03316 5.07936 5.33602 5.42551 5.51535 5.66767 5.91074 6.19929 6.33046 6.62914 6.76267 7.32332 7.34358 8.91931 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032027 B = 0.008989 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.063019 B = 3114.203125 C = 3631.681224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.260 3.740 3 N -0.519 5.519 4 C 0.168 3.832 5 C -0.028 4.028 6 N -0.551 5.551 7 H 0.443 0.557 8 C 0.094 3.906 9 C -0.170 4.170 10 C 0.061 3.939 11 C -0.509 4.509 12 H 0.018 0.982 13 C 0.004 3.996 14 N -0.955 5.955 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.237 1.237 19 C 0.094 3.906 20 N -0.517 5.517 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.213 0.787 25 H 0.219 0.781 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 13.877 9.376 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.009 4.009 3 N -0.234 5.234 4 C -0.008 4.008 5 C -0.141 4.141 6 N -0.156 5.156 7 H 0.285 0.715 8 C -0.037 4.037 9 C -0.178 4.178 10 C 0.023 3.977 11 C -0.547 4.547 12 H 0.036 0.964 13 C -0.192 4.192 14 N -0.596 5.596 15 Si 0.775 3.225 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.160 1.160 19 C -0.045 4.045 20 N -0.232 5.232 21 H 0.113 0.887 22 H 0.118 0.882 23 H 0.091 0.909 24 H 0.230 0.770 25 H 0.236 0.764 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.003 13.716 9.276 16.828 hybrid contribution 0.826 -0.717 -0.166 1.106 sum 3.829 12.999 9.110 16.329 Atomic orbital electron populations 1.20502 0.84092 1.04079 1.04363 1.23551 0.99276 0.82765 0.95333 1.68232 1.09354 1.29309 1.16472 1.22928 0.88495 0.96524 0.92872 1.19990 0.87161 0.97666 1.09326 1.41257 1.04469 1.06911 1.62998 0.71469 1.22271 0.99526 0.82039 0.99859 1.20572 0.90932 0.95239 1.11025 1.17889 0.96722 0.88187 0.94884 1.21181 1.47825 0.93349 0.92337 0.96402 1.25987 0.94190 1.00518 0.98483 1.70073 1.51091 1.16747 1.21703 0.85633 0.79420 0.77597 0.79824 1.20199 1.20559 1.15996 1.20622 0.89671 0.94070 1.00178 1.67684 1.09438 1.31437 1.14640 0.88729 0.88244 0.90904 0.77026 0.76433 0.97174 0.93557 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 10.30 71.24 0.73 -1.31 15 2 C 0.26 9.65 7.64 138.73 1.06 10.71 15 3 N -0.52 -16.77 10.30 -187.56 -1.93 -18.70 15 4 C 0.17 4.54 11.35 84.78 0.96 5.51 15 5 C -0.03 -0.89 7.34 39.13 0.29 -0.60 15 6 N -0.55 -13.21 6.05 -187.56 -1.13 -14.35 15 7 H 0.44 5.78 8.96 -92.71 -0.83 4.95 15 8 C 0.09 2.84 11.73 83.13 0.98 3.82 15 9 C -0.17 -7.31 5.49 -18.71 -0.10 -7.42 15 10 C 0.06 3.04 4.57 29.10 0.13 3.17 15 11 C -0.51 -30.84 9.65 25.60 0.25 -30.59 15 12 H 0.02 1.21 7.98 -2.91 -0.02 1.19 15 13 C 0.00 0.25 5.47 84.65 0.46 0.72 15 14 N -0.95 -61.96 13.96 21.44 0.30 -61.66 15 15 Si 0.95 45.49 27.47 68.60 1.88 47.38 15 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 18 H -0.24 -10.15 6.54 99.48 0.65 -9.50 15 19 C 0.09 4.07 7.55 41.63 0.31 4.38 15 20 N -0.52 -23.46 10.39 -177.92 -1.85 -25.30 15 21 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.21 3.26 8.06 -2.91 -0.02 3.24 15 25 H 0.22 4.70 8.06 -2.91 -0.02 4.68 15 26 H 0.01 0.52 7.57 -2.39 -0.02 0.51 15 27 H 0.05 2.08 7.20 -2.39 -0.02 2.06 15 28 H 0.27 16.01 8.31 -92.71 -0.77 15.24 15 Total: -1.00 -82.40 250.58 2.64 -79.76 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.30 Total: 4.49 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 5.07 Total: -11.61 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.62 Total: -120.02 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -82.40 2.64 -79.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241789.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.530 kcal (2) G-P(sol) polarization free energy of solvation -82.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds