Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47209 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46812 * 120.00325 * 3 2 1 6 6 H 1.48498 * 109.47251 * 240.00214 * 3 2 1 7 7 C 1.37870 * 119.99847 * 180.27898 * 2 1 3 8 8 H 1.08006 * 119.99945 * 175.32151 * 7 2 1 9 9 C 1.50699 * 120.00314 * 355.32890 * 7 2 1 10 10 H 1.09003 * 109.47195 * 54.90625 * 9 7 2 11 11 N 1.46905 * 109.46925 * 294.90717 * 9 7 2 12 12 C 1.50696 * 109.47357 * 174.91027 * 9 7 2 13 13 C 1.34951 * 119.69957 * 84.99675 * 12 9 7 14 14 C 1.40469 * 120.30105 * 180.02562 * 13 12 9 15 15 C 1.36022 * 119.69742 * 0.02562 * 14 13 12 16 16 C 1.40935 * 119.32542 * 359.97438 * 15 14 13 17 17 N 1.32560 * 132.32856 * 180.02562 * 16 15 14 18 18 C 1.33512 * 109.16001 * 179.97438 * 17 16 15 19 19 C 1.35112 * 108.62396 * 0.02562 * 18 17 16 20 20 N 1.36486 * 119.69438 * 264.72385 * 12 9 7 21 21 H 0.96997 * 119.99595 * 176.21784 * 1 2 3 22 22 H 1.00903 * 110.99971 * 305.92383 * 11 9 7 23 23 H 1.00906 * 110.99871 * 69.87148 * 11 9 7 24 24 H 1.07998 * 119.84670 * 359.97438 * 13 12 9 25 25 H 1.08006 * 120.15541 * 180.02562 * 14 13 12 26 26 H 1.07994 * 120.33711 * 180.02562 * 15 14 13 27 27 H 1.07994 * 125.68841 * 179.97438 * 18 17 16 28 28 H 1.08001 * 126.40394 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0058 8 1 3.0819 -1.1952 -0.0821 9 6 1.2548 -2.4974 0.0941 10 1 0.5039 -2.5461 -0.6945 11 7 0.5955 -2.5839 1.4041 12 6 2.2196 -3.6449 -0.0593 13 6 2.8963 -4.0979 1.0168 14 6 3.7990 -5.1664 0.8881 15 6 3.9900 -5.7445 -0.3283 16 6 3.2758 -5.2600 -1.4425 17 7 3.2599 -5.6204 -2.7181 18 6 2.4035 -4.8413 -3.3829 19 6 1.8581 -3.9609 -2.5152 20 7 2.3967 -4.2202 -1.2843 21 1 -0.4849 -0.8382 -0.0554 22 1 1.2580 -2.4445 2.1522 23 1 -0.1670 -1.9263 1.4692 24 1 2.7437 -3.6363 1.9812 25 1 4.3391 -5.5273 1.7510 26 1 4.6812 -6.5668 -0.4389 27 1 2.1840 -4.9037 -4.4385 28 1 1.1295 -3.1986 -2.7485 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244140.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = 81.619286 kcal Electronic energy + Delta-G solvation = -14227.014753 eV Core-core repulsion = 11857.834968 eV Total energy + Delta-G solvation = -2369.179785 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.24946 -37.37194 -35.16597 -32.96735 -31.39258 -29.25696 -28.09229 -26.12794 -23.71528 -22.14457 -21.91847 -20.02165 -17.54802 -17.27295 -16.01726 -15.60366 -15.24444 -14.59378 -14.01733 -13.61072 -13.26630 -13.04014 -12.93940 -12.40594 -11.90143 -11.57562 -11.11565 -11.01571 -10.52440 -10.37291 -10.24246 -9.77034 -9.65283 -8.80118 -8.28933 -7.71001 -7.20138 -6.68523 -4.54887 1.37097 1.84341 3.17974 3.24876 3.27369 3.41619 3.45643 4.05589 4.26497 4.70575 4.93981 5.09351 5.32832 5.35384 5.50477 5.84229 5.92820 6.02125 6.10807 6.35231 6.55960 6.68472 6.69832 7.10624 7.16978 7.46422 7.69336 7.93784 8.14000 8.33550 8.37154 8.44943 9.16790 10.60517 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.033658 B = 0.009884 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.699183 B = 2832.119951 C = 3106.531781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.033 3.967 3 Si 1.070 2.930 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.629 4.629 8 H 0.054 0.946 9 C 0.230 3.770 10 H 0.047 0.953 11 N -0.849 5.849 12 C 0.159 3.841 13 C -0.165 4.165 14 C -0.082 4.082 15 C -0.122 4.122 16 C 0.223 3.777 17 N -0.512 5.512 18 C 0.015 3.985 19 C -0.086 4.086 20 N -0.351 5.351 21 H 0.270 0.730 22 H 0.329 0.671 23 H 0.344 0.656 24 H 0.145 0.855 25 H 0.134 0.866 26 H 0.141 0.859 27 H 0.175 0.825 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -5.652 0.863 7.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.173 4.173 3 Si 0.897 3.103 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.669 4.669 8 H 0.072 0.928 9 C 0.119 3.881 10 H 0.065 0.935 11 N -0.379 5.379 12 C 0.054 3.946 13 C -0.186 4.186 14 C -0.106 4.106 15 C -0.142 4.142 16 C -0.021 4.021 17 N -0.232 5.232 18 C -0.136 4.136 19 C -0.217 4.217 20 N -0.022 5.022 21 H 0.082 0.918 22 H 0.140 0.860 23 H 0.158 0.842 24 H 0.162 0.838 25 H 0.152 0.848 26 H 0.159 0.841 27 H 0.192 0.808 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.084 -5.368 0.302 6.751 hybrid contribution 0.030 0.086 0.250 0.266 sum 4.114 -5.281 0.551 6.717 Atomic orbital electron populations 1.70901 1.06744 1.30865 1.44953 1.25952 0.96312 1.02771 0.92311 0.83510 0.74984 0.74865 0.76953 1.20418 1.21091 1.21172 1.22451 0.95268 0.91273 1.57928 0.92800 1.18090 0.90853 0.88650 0.90472 0.93525 1.59450 1.15031 1.58945 1.04486 1.20786 0.97737 0.94110 0.81917 1.20379 0.99762 0.99848 0.98613 1.21019 0.97229 0.95369 0.96972 1.19993 1.02067 1.02792 0.89381 1.20962 0.95868 0.91142 0.94124 1.70659 1.23191 1.28265 1.01116 1.22339 0.97023 0.94522 0.99698 1.22639 1.08473 1.07546 0.83076 1.42775 1.28509 1.23455 1.07450 0.91807 0.85990 0.84186 0.83787 0.84807 0.84141 0.80826 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 13.14 55.43 0.73 -23.56 15 2 C 0.03 0.85 5.39 -17.82 -0.10 0.76 15 3 Si 1.07 23.39 29.91 -169.99 -5.08 18.31 15 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.29 -6.14 7.11 56.52 0.40 -5.73 15 7 C -0.63 -16.13 8.61 -34.44 -0.30 -16.43 15 8 H 0.05 1.44 7.75 -52.48 -0.41 1.03 15 9 C 0.23 5.34 2.42 -70.02 -0.17 5.17 15 10 H 0.05 1.18 6.72 -51.93 -0.35 0.83 15 11 N -0.85 -18.06 8.85 -6.65 -0.06 -18.11 15 12 C 0.16 3.43 5.84 -81.69 -0.48 2.95 15 13 C -0.17 -3.07 9.23 -39.91 -0.37 -3.44 15 14 C -0.08 -1.29 10.07 -39.54 -0.40 -1.69 15 15 C -0.12 -2.07 10.11 -39.36 -0.40 -2.47 15 16 C 0.22 4.52 7.81 -156.04 -1.22 3.30 15 17 N -0.51 -10.38 11.32 -12.78 -0.14 -10.52 15 18 C 0.01 0.27 11.83 -17.93 -0.21 0.06 15 19 C -0.09 -1.70 11.06 -16.43 -0.18 -1.88 15 20 N -0.35 -7.47 2.95 -58.45 -0.17 -7.64 15 21 H 0.27 7.22 5.91 -40.82 -0.24 6.98 15 22 H 0.33 6.57 7.41 -39.29 -0.29 6.28 15 23 H 0.34 7.64 7.15 -39.29 -0.28 7.36 15 24 H 0.14 2.47 6.53 -52.49 -0.34 2.13 15 25 H 0.13 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.14 1.97 8.06 -52.49 -0.42 1.55 15 27 H 0.17 2.47 8.06 -52.49 -0.42 2.05 15 28 H 0.18 3.30 7.68 -52.49 -0.40 2.90 15 LS Contribution 243.16 15.07 3.66 3.66 Total: -1.00 -29.04 243.16 -7.26 -36.30 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -2.38 Total: 15.23 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.82 Total: -13.67 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.35 Total: -59.83 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.08 Total: 18.31 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.04 -7.26 -36.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244140.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.919 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds