Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47209 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46812 * 120.00325 * 3 2 1 6 6 H 1.48498 * 109.47251 * 240.00214 * 3 2 1 7 7 C 1.37870 * 119.99847 * 180.27898 * 2 1 3 8 8 H 1.08006 * 119.99945 * 175.32151 * 7 2 1 9 9 C 1.50699 * 120.00314 * 355.32890 * 7 2 1 10 10 H 1.09003 * 109.47195 * 54.90625 * 9 7 2 11 11 N 1.46905 * 109.46925 * 294.90717 * 9 7 2 12 12 C 1.50696 * 109.47357 * 174.91027 * 9 7 2 13 13 C 1.34951 * 119.69957 * 84.99675 * 12 9 7 14 14 C 1.40469 * 120.30105 * 180.02562 * 13 12 9 15 15 C 1.36022 * 119.69742 * 0.02562 * 14 13 12 16 16 C 1.40935 * 119.32542 * 359.97438 * 15 14 13 17 17 N 1.32560 * 132.32856 * 180.02562 * 16 15 14 18 18 C 1.33512 * 109.16001 * 179.97438 * 17 16 15 19 19 C 1.35112 * 108.62396 * 0.02562 * 18 17 16 20 20 N 1.36486 * 119.69438 * 264.72385 * 12 9 7 21 21 H 0.96997 * 119.99595 * 176.21784 * 1 2 3 22 22 H 1.00903 * 110.99971 * 305.92383 * 11 9 7 23 23 H 1.00906 * 110.99871 * 69.87148 * 11 9 7 24 24 H 1.07998 * 119.84670 * 359.97438 * 13 12 9 25 25 H 1.08006 * 120.15541 * 180.02562 * 14 13 12 26 26 H 1.07994 * 120.33711 * 180.02562 * 15 14 13 27 27 H 1.07994 * 125.68841 * 179.97438 * 18 17 16 28 28 H 1.08001 * 126.40394 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0058 8 1 3.0819 -1.1952 -0.0821 9 6 1.2548 -2.4974 0.0941 10 1 0.5039 -2.5461 -0.6945 11 7 0.5955 -2.5839 1.4041 12 6 2.2196 -3.6449 -0.0593 13 6 2.8963 -4.0979 1.0168 14 6 3.7990 -5.1664 0.8881 15 6 3.9900 -5.7445 -0.3283 16 6 3.2758 -5.2600 -1.4425 17 7 3.2599 -5.6204 -2.7181 18 6 2.4035 -4.8413 -3.3829 19 6 1.8581 -3.9609 -2.5152 20 7 2.3967 -4.2202 -1.2843 21 1 -0.4849 -0.8382 -0.0554 22 1 1.2580 -2.4445 2.1522 23 1 -0.1670 -1.9263 1.4692 24 1 2.7437 -3.6363 1.9812 25 1 4.3391 -5.5273 1.7510 26 1 4.6812 -6.5668 -0.4389 27 1 2.1840 -4.9037 -4.4385 28 1 1.1295 -3.1986 -2.7485 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244140.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = 63.036830 kcal Electronic energy + Delta-G solvation = -14227.820549 eV Core-core repulsion = 11857.834968 eV Total energy + Delta-G solvation = -2369.985581 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.73034 -38.92928 -36.84516 -34.51674 -33.21241 -30.75499 -29.59277 -27.95598 -25.43952 -23.58237 -23.48198 -21.63982 -19.33169 -18.91628 -17.51226 -17.10442 -16.76851 -16.10432 -15.79543 -15.17935 -14.91424 -14.63897 -14.55651 -14.15474 -13.49672 -13.02295 -12.72739 -12.62053 -12.08895 -11.96253 -11.91571 -11.61904 -11.20427 -10.76223 -9.77717 -9.52758 -8.85683 -8.56837 -6.60615 -0.05774 0.38695 1.48841 1.52021 1.70707 1.73943 1.92836 2.43096 2.63604 2.97094 3.33305 3.56375 3.82494 4.01441 4.10936 4.30803 4.41808 4.50807 4.73955 4.83332 5.00769 5.27548 5.28384 5.54040 5.65965 5.73626 5.89839 6.15041 6.31507 6.35965 6.66123 6.85097 7.17375 8.55385 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.033658 B = 0.009884 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.699183 B = 2832.119951 C = 3106.531781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 1.111 2.889 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.281 1.281 7 C -0.635 4.635 8 H 0.039 0.961 9 C 0.238 3.762 10 H 0.015 0.985 11 N -0.836 5.836 12 C 0.114 3.886 13 C -0.152 4.152 14 C -0.071 4.071 15 C -0.120 4.120 16 C 0.201 3.799 17 N -0.530 5.530 18 C 0.025 3.975 19 C -0.119 4.119 20 N -0.361 5.361 21 H 0.262 0.738 22 H 0.337 0.663 23 H 0.338 0.662 24 H 0.157 0.843 25 H 0.185 0.815 26 H 0.175 0.825 27 H 0.210 0.790 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -6.468 1.774 8.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.933 3.067 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.207 1.207 7 C -0.674 4.674 8 H 0.057 0.943 9 C 0.127 3.873 10 H 0.033 0.967 11 N -0.366 5.366 12 C 0.009 3.991 13 C -0.173 4.173 14 C -0.095 4.095 15 C -0.140 4.140 16 C -0.042 4.042 17 N -0.252 5.252 18 C -0.125 4.125 19 C -0.250 4.250 20 N -0.032 5.032 21 H 0.073 0.927 22 H 0.150 0.850 23 H 0.151 0.849 24 H 0.174 0.826 25 H 0.203 0.797 26 H 0.192 0.808 27 H 0.227 0.773 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.759 -6.204 1.226 8.553 hybrid contribution -0.462 0.253 -0.022 0.527 sum 5.297 -5.951 1.204 8.057 Atomic orbital electron populations 1.70991 1.07430 1.30440 1.46631 1.27111 0.96408 1.05728 0.91636 0.82969 0.74230 0.71694 0.77758 1.20594 1.19213 1.20688 1.22626 0.94586 0.92742 1.57455 0.94263 1.17795 0.90331 0.89001 0.90170 0.96730 1.59395 1.14769 1.58421 1.04014 1.20698 0.99711 0.95416 0.83239 1.20783 0.98697 0.99788 0.98055 1.21487 0.96061 0.93613 0.98292 1.20556 1.01583 1.03223 0.88644 1.21706 0.96184 0.91130 0.95185 1.70684 1.24042 1.28975 1.01462 1.22906 0.95560 0.93060 1.01002 1.22854 1.09760 1.08803 0.83625 1.42886 1.28917 1.23863 1.07517 0.92712 0.85034 0.84935 0.82580 0.79734 0.80809 0.77294 0.81115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.45 13.14 21.45 0.28 -50.17 15 2 C -0.01 -0.38 5.39 84.65 0.46 0.08 15 3 Si 1.11 46.90 29.91 68.60 2.05 48.96 15 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.27 -10.44 7.11 99.48 0.71 -9.74 15 6 H -0.28 -11.56 7.11 99.48 0.71 -10.86 15 7 C -0.63 -32.95 8.61 25.60 0.22 -32.73 15 8 H 0.04 2.11 7.75 -2.91 -0.02 2.09 15 9 C 0.24 11.30 2.42 43.42 0.11 11.41 15 10 H 0.01 0.79 6.72 -2.39 -0.02 0.77 15 11 N -0.84 -35.79 8.85 -174.95 -1.55 -37.34 15 12 C 0.11 4.89 5.84 41.08 0.24 5.13 15 13 C -0.15 -5.35 9.23 22.06 0.20 -5.14 15 14 C -0.07 -1.96 10.07 22.30 0.22 -1.74 15 15 C -0.12 -3.69 10.11 22.42 0.23 -3.46 15 16 C 0.20 7.90 7.81 134.10 1.05 8.95 15 17 N -0.53 -20.92 11.32 -194.34 -2.20 -23.12 15 18 C 0.03 0.92 11.83 83.72 0.99 1.91 15 19 C -0.12 -4.86 11.06 83.19 0.92 -3.94 15 20 N -0.36 -15.39 2.95 -338.84 -1.00 -16.39 15 21 H 0.26 14.45 5.91 -92.71 -0.55 13.90 15 22 H 0.34 13.27 7.41 -89.69 -0.66 12.61 15 23 H 0.34 15.27 7.15 -89.69 -0.64 14.63 15 24 H 0.16 4.97 6.53 -2.91 -0.02 4.95 15 25 H 0.19 3.22 8.06 -2.91 -0.02 3.19 15 26 H 0.17 4.10 8.06 -2.91 -0.02 4.07 15 27 H 0.21 5.65 8.06 -2.91 -0.02 5.63 15 28 H 0.17 6.84 7.68 -2.91 -0.02 6.82 15 Total: -1.00 -63.01 243.16 2.34 -60.67 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.12 Total: 36.93 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.63 Total: -19.54 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -4.46 Total: -127.02 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.05 Total: 48.96 kcal Total: -63.01 2.34 -60.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244140.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.708 kcal (2) G-P(sol) polarization free energy of solvation -63.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds