Wall clock time and date at job start Mon Mar 30 2020 03:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47222 * 2 1 4 4 C 1.50700 * 109.46821 * 239.99933 * 2 1 3 5 5 H 1.08002 * 120.00328 * 245.37331 * 4 2 1 6 6 C 1.37887 * 119.99859 * 65.37712 * 4 2 1 7 7 N 1.31510 * 119.99853 * 185.16312 * 6 4 2 8 8 Si 1.86799 * 119.99794 * 5.16636 * 6 4 2 9 9 H 1.48504 * 109.46957 * 269.99682 * 8 6 4 10 10 H 1.48497 * 109.47231 * 30.00003 * 8 6 4 11 11 H 1.48497 * 109.46961 * 150.00008 * 8 6 4 12 12 C 1.50700 * 109.46902 * 120.00775 * 2 1 3 13 13 C 1.39449 * 126.58919 * 59.68701 * 12 2 1 14 14 C 1.36001 * 107.99908 * 179.83423 * 13 12 2 15 15 N 1.34503 * 109.16735 * 0.43594 * 14 13 12 16 16 N 1.40222 * 133.27806 * 179.73405 * 15 14 13 17 17 C 1.30476 * 119.80499 * 179.97438 * 16 15 14 18 18 N 1.33279 * 122.19567 * 359.97438 * 17 16 15 19 19 C 1.31463 * 121.78303 * 0.02562 * 18 17 16 20 20 C 1.38409 * 126.57998 * 239.99451 * 12 2 1 21 21 H 1.09000 * 109.47428 * 174.96097 * 1 2 3 22 22 H 1.09005 * 109.47152 * 294.96103 * 1 2 3 23 23 H 1.08996 * 109.47341 * 54.95991 * 1 2 3 24 24 H 0.97000 * 120.00170 * 355.00052 * 7 6 4 25 25 H 1.07998 * 125.99480 * 359.95868 * 13 12 2 26 26 H 1.08000 * 125.41547 * 180.16388 * 14 13 12 27 27 H 1.07995 * 118.90645 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.30290 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1338 6 6 1.7929 -0.1782 -2.4798 7 7 2.1411 -0.8472 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4991 1.3181 -2.7073 10 1 1.3216 2.3305 -1.4658 11 1 1.4492 2.1587 -3.8813 12 6 2.0323 -0.7106 1.2304 13 6 1.7765 -2.0338 1.5887 14 6 2.4155 -2.2821 2.7633 15 7 3.0541 -1.1678 3.1628 16 7 3.8459 -0.8613 4.2787 17 6 4.3489 0.3357 4.4081 18 7 4.1380 1.2956 3.5079 19 6 3.4078 1.0898 2.4343 20 6 2.8312 -0.1734 2.2248 21 1 -0.3634 -1.0237 -0.0903 22 1 -0.3634 0.4337 0.9317 23 1 -0.3634 0.5900 -0.8414 24 1 2.6309 -1.6803 -3.4737 25 1 1.1779 -2.7382 1.0303 26 1 2.4075 -3.2230 3.2934 27 1 4.9570 0.5557 5.2730 28 1 3.2528 1.8848 1.7200 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:29 Heat of formation + Delta-G solvation = 113.275328 kcal Electronic energy + Delta-G solvation = -14051.291243 eV Core-core repulsion = 11683.484166 eV Total energy + Delta-G solvation = -2367.807076 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74193 -37.99245 -34.91123 -33.20863 -31.39710 -30.00265 -28.17980 -24.75891 -24.67017 -22.63158 -21.57807 -19.01850 -18.26491 -17.41061 -17.06287 -15.46081 -15.17641 -14.44710 -13.84285 -13.46275 -12.96770 -12.77660 -12.58746 -12.51955 -12.02640 -11.53860 -11.31701 -10.85282 -10.66260 -10.46732 -9.86044 -9.74037 -9.40208 -8.74946 -8.47097 -8.34128 -7.51468 -6.42936 -4.11560 0.62552 1.70510 2.30233 3.28769 3.36011 3.40949 3.56648 3.73549 4.19215 4.41387 4.45901 5.03742 5.26827 5.38069 5.47283 5.70827 5.91040 6.08228 6.26201 6.34947 6.55783 6.62144 6.71924 6.90007 7.04641 7.21589 7.31263 7.54694 8.01548 8.27448 8.36101 8.86858 9.58529 10.94578 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040267 B = 0.009180 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.196531 B = 3049.418412 C = 3331.696554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 H 0.035 0.965 4 C -0.582 4.582 5 H 0.059 0.941 6 C 0.028 3.972 7 N -0.913 5.913 8 Si 1.055 2.945 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.291 1.291 12 C -0.002 4.002 13 C -0.177 4.177 14 C 0.051 3.949 15 N -0.264 5.264 16 N -0.335 5.335 17 C 0.282 3.718 18 N -0.581 5.581 19 C 0.289 3.711 20 C -0.130 4.130 21 H 0.053 0.947 22 H 0.027 0.973 23 H 0.045 0.955 24 H 0.267 0.733 25 H 0.156 0.844 26 H 0.170 0.830 27 H 0.210 0.790 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 2.022 11.942 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.043 3.957 3 H 0.053 0.947 4 C -0.620 4.620 5 H 0.078 0.922 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.885 3.115 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.218 1.218 12 C -0.015 4.015 13 C -0.201 4.201 14 C -0.092 4.092 15 N -0.027 5.027 16 N -0.150 5.150 17 C -0.016 4.016 18 N -0.299 5.299 19 C 0.103 3.897 20 C -0.235 4.235 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.173 0.827 26 H 0.187 0.813 27 H 0.226 0.774 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.160 2.980 12.027 12.392 hybrid contribution 0.378 -1.420 0.643 1.604 sum 0.218 1.560 12.670 12.768 Atomic orbital electron populations 1.22077 0.97904 1.01232 0.98532 1.17952 0.92121 0.95605 0.90072 0.94718 1.21988 1.39611 1.10164 0.90269 0.92250 1.25784 0.96496 1.03460 0.91897 1.70807 1.36760 1.16853 1.30299 0.83849 0.76363 0.75688 0.75622 1.20994 1.20421 1.21752 1.20430 0.93705 0.93855 0.93519 1.21025 1.05495 0.97386 0.96175 1.21622 0.99505 0.89885 0.98145 1.44982 1.33398 1.10499 1.13808 1.75882 1.11382 1.21886 1.05866 1.25539 0.93959 0.84528 0.97619 1.68488 1.21786 1.34391 1.05232 1.23197 0.82448 0.92982 0.91063 1.19888 1.13373 0.93131 0.97147 0.92754 0.95353 0.93621 0.92238 0.82652 0.81260 0.77352 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.65 37.16 0.32 -2.52 15 2 C 0.06 1.39 2.26 -92.92 -0.21 1.18 15 3 H 0.03 0.76 6.35 -51.93 -0.33 0.43 15 4 C -0.58 -15.52 8.80 -34.44 -0.30 -15.82 15 5 H 0.06 1.73 7.94 -52.49 -0.42 1.31 15 6 C 0.03 0.77 5.43 -17.82 -0.10 0.67 15 7 N -0.91 -27.34 13.70 55.43 0.76 -26.58 15 8 Si 1.06 24.31 25.29 -169.99 -4.30 20.01 15 9 H -0.28 -6.20 6.81 56.52 0.38 -5.81 15 10 H -0.28 -5.81 6.36 56.52 0.36 -5.45 15 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 12 C 0.00 -0.04 4.86 -104.11 -0.51 -0.54 15 13 C -0.18 -3.27 10.42 -39.93 -0.42 -3.68 15 14 C 0.05 0.86 11.85 -17.18 -0.20 0.66 15 15 N -0.26 -4.90 3.99 -10.83 -0.04 -4.94 15 16 N -0.34 -5.70 11.98 29.25 0.35 -5.35 15 17 C 0.28 4.17 12.35 -91.98 -1.14 3.03 15 18 N -0.58 -9.36 10.40 -14.26 -0.15 -9.51 15 19 C 0.29 4.92 11.24 -16.89 -0.19 4.73 15 20 C -0.13 -2.50 6.80 -83.96 -0.57 -3.07 15 21 H 0.05 1.09 8.14 -51.93 -0.42 0.66 15 22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 15 23 H 0.05 0.94 4.40 -51.93 -0.23 0.71 15 24 H 0.27 8.01 8.72 -40.82 -0.36 7.66 15 25 H 0.16 2.69 8.06 -52.49 -0.42 2.27 15 26 H 0.17 2.24 8.06 -52.49 -0.42 1.81 15 27 H 0.21 2.08 8.06 -52.49 -0.42 1.65 15 28 H 0.18 2.63 7.88 -52.49 -0.41 2.22 15 LS Contribution 244.03 15.07 3.68 3.68 Total: -1.00 -31.19 244.03 -5.73 -36.92 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.71 Total: 1.14 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -3.31 Total: -15.37 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.92 Total: -46.37 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.30 Total: 20.01 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.19 -5.73 -36.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.191 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds