Wall clock time and date at job start Mon Mar 30 2020 03:10:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08993 * 109.47222 * 2 1
4 4 C 1.50700 * 109.46821 * 239.99933 * 2 1 3
5 5 H 1.08002 * 120.00328 * 245.37331 * 4 2 1
6 6 C 1.37887 * 119.99859 * 65.37712 * 4 2 1
7 7 N 1.31510 * 119.99853 * 185.16312 * 6 4 2
8 8 Si 1.86799 * 119.99794 * 5.16636 * 6 4 2
9 9 H 1.48504 * 109.46957 * 269.99682 * 8 6 4
10 10 H 1.48497 * 109.47231 * 30.00003 * 8 6 4
11 11 H 1.48497 * 109.46961 * 150.00008 * 8 6 4
12 12 C 1.50700 * 109.46902 * 120.00775 * 2 1 3
13 13 C 1.39449 * 126.58919 * 59.68701 * 12 2 1
14 14 C 1.36001 * 107.99908 * 179.83423 * 13 12 2
15 15 N 1.34503 * 109.16735 * 0.43594 * 14 13 12
16 16 N 1.40222 * 133.27806 * 179.73405 * 15 14 13
17 17 C 1.30476 * 119.80499 * 179.97438 * 16 15 14
18 18 N 1.33279 * 122.19567 * 359.97438 * 17 16 15
19 19 C 1.31463 * 121.78303 * 0.02562 * 18 17 16
20 20 C 1.38409 * 126.57998 * 239.99451 * 12 2 1
21 21 H 1.09000 * 109.47428 * 174.96097 * 1 2 3
22 22 H 1.09005 * 109.47152 * 294.96103 * 1 2 3
23 23 H 1.08996 * 109.47341 * 54.95991 * 1 2 3
24 24 H 0.97000 * 120.00170 * 355.00052 * 7 6 4
25 25 H 1.07998 * 125.99480 * 359.95868 * 13 12 2
26 26 H 1.08000 * 125.41547 * 180.16388 * 14 13 12
27 27 H 1.07995 * 118.90645 * 180.02562 * 17 16 15
28 28 H 1.07997 * 120.30290 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.5797 -1.6364 -1.1338
6 6 1.7929 -0.1782 -2.4798
7 7 2.1411 -0.8472 -3.5572
8 14 0.9742 1.4929 -2.6418
9 1 -0.4991 1.3181 -2.7073
10 1 1.3216 2.3305 -1.4658
11 1 1.4492 2.1587 -3.8813
12 6 2.0323 -0.7106 1.2304
13 6 1.7765 -2.0338 1.5887
14 6 2.4155 -2.2821 2.7633
15 7 3.0541 -1.1678 3.1628
16 7 3.8459 -0.8613 4.2787
17 6 4.3489 0.3357 4.4081
18 7 4.1380 1.2956 3.5079
19 6 3.4078 1.0898 2.4343
20 6 2.8312 -0.1734 2.2248
21 1 -0.3634 -1.0237 -0.0903
22 1 -0.3634 0.4337 0.9317
23 1 -0.3634 0.5900 -0.8414
24 1 2.6309 -1.6803 -3.4737
25 1 1.1779 -2.7382 1.0303
26 1 2.4075 -3.2230 3.2934
27 1 4.9570 0.5557 5.2730
28 1 3.2528 1.8848 1.7200
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261244537.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:29
Heat of formation + Delta-G solvation = 113.275328 kcal
Electronic energy + Delta-G solvation = -14051.291243 eV
Core-core repulsion = 11683.484166 eV
Total energy + Delta-G solvation = -2367.807076 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.74193 -37.99245 -34.91123 -33.20863 -31.39710 -30.00265 -28.17980 -24.75891
-24.67017 -22.63158 -21.57807 -19.01850 -18.26491 -17.41061 -17.06287 -15.46081
-15.17641 -14.44710 -13.84285 -13.46275 -12.96770 -12.77660 -12.58746 -12.51955
-12.02640 -11.53860 -11.31701 -10.85282 -10.66260 -10.46732 -9.86044 -9.74037
-9.40208 -8.74946 -8.47097 -8.34128 -7.51468 -6.42936 -4.11560 0.62552
1.70510 2.30233 3.28769 3.36011 3.40949 3.56648 3.73549 4.19215
4.41387 4.45901 5.03742 5.26827 5.38069 5.47283 5.70827 5.91040
6.08228 6.26201 6.34947 6.55783 6.62144 6.71924 6.90007 7.04641
7.21589 7.31263 7.54694 8.01548 8.27448 8.36101 8.86858 9.58529
10.94578
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.040267 B = 0.009180 C = 0.008402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 695.196531 B = 3049.418412 C = 3331.696554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.062 3.938
3 H 0.035 0.965
4 C -0.582 4.582
5 H 0.059 0.941
6 C 0.028 3.972
7 N -0.913 5.913
8 Si 1.055 2.945
9 H -0.283 1.283
10 H -0.278 1.278
11 H -0.291 1.291
12 C -0.002 4.002
13 C -0.177 4.177
14 C 0.051 3.949
15 N -0.264 5.264
16 N -0.335 5.335
17 C 0.282 3.718
18 N -0.581 5.581
19 C 0.289 3.711
20 C -0.130 4.130
21 H 0.053 0.947
22 H 0.027 0.973
23 H 0.045 0.955
24 H 0.267 0.733
25 H 0.156 0.844
26 H 0.170 0.830
27 H 0.210 0.790
28 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.272 2.022 11.942 12.115
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.043 3.957
3 H 0.053 0.947
4 C -0.620 4.620
5 H 0.078 0.922
6 C -0.176 4.176
7 N -0.547 5.547
8 Si 0.885 3.115
9 H -0.210 1.210
10 H -0.204 1.204
11 H -0.218 1.218
12 C -0.015 4.015
13 C -0.201 4.201
14 C -0.092 4.092
15 N -0.027 5.027
16 N -0.150 5.150
17 C -0.016 4.016
18 N -0.299 5.299
19 C 0.103 3.897
20 C -0.235 4.235
21 H 0.072 0.928
22 H 0.046 0.954
23 H 0.064 0.936
24 H 0.078 0.922
25 H 0.173 0.827
26 H 0.187 0.813
27 H 0.226 0.774
28 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -0.160 2.980 12.027 12.392
hybrid contribution 0.378 -1.420 0.643 1.604
sum 0.218 1.560 12.670 12.768
Atomic orbital electron populations
1.22077 0.97904 1.01232 0.98532 1.17952 0.92121 0.95605 0.90072
0.94718 1.21988 1.39611 1.10164 0.90269 0.92250 1.25784 0.96496
1.03460 0.91897 1.70807 1.36760 1.16853 1.30299 0.83849 0.76363
0.75688 0.75622 1.20994 1.20421 1.21752 1.20430 0.93705 0.93855
0.93519 1.21025 1.05495 0.97386 0.96175 1.21622 0.99505 0.89885
0.98145 1.44982 1.33398 1.10499 1.13808 1.75882 1.11382 1.21886
1.05866 1.25539 0.93959 0.84528 0.97619 1.68488 1.21786 1.34391
1.05232 1.23197 0.82448 0.92982 0.91063 1.19888 1.13373 0.93131
0.97147 0.92754 0.95353 0.93621 0.92238 0.82652 0.81260 0.77352
0.80007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.84 8.65 37.16 0.32 -2.52 15
2 C 0.06 1.39 2.26 -92.92 -0.21 1.18 15
3 H 0.03 0.76 6.35 -51.93 -0.33 0.43 15
4 C -0.58 -15.52 8.80 -34.44 -0.30 -15.82 15
5 H 0.06 1.73 7.94 -52.49 -0.42 1.31 15
6 C 0.03 0.77 5.43 -17.82 -0.10 0.67 15
7 N -0.91 -27.34 13.70 55.43 0.76 -26.58 15
8 Si 1.06 24.31 25.29 -169.99 -4.30 20.01 15
9 H -0.28 -6.20 6.81 56.52 0.38 -5.81 15
10 H -0.28 -5.81 6.36 56.52 0.36 -5.45 15
11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15
12 C 0.00 -0.04 4.86 -104.11 -0.51 -0.54 15
13 C -0.18 -3.27 10.42 -39.93 -0.42 -3.68 15
14 C 0.05 0.86 11.85 -17.18 -0.20 0.66 15
15 N -0.26 -4.90 3.99 -10.83 -0.04 -4.94 15
16 N -0.34 -5.70 11.98 29.25 0.35 -5.35 15
17 C 0.28 4.17 12.35 -91.98 -1.14 3.03 15
18 N -0.58 -9.36 10.40 -14.26 -0.15 -9.51 15
19 C 0.29 4.92 11.24 -16.89 -0.19 4.73 15
20 C -0.13 -2.50 6.80 -83.96 -0.57 -3.07 15
21 H 0.05 1.09 8.14 -51.93 -0.42 0.66 15
22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 15
23 H 0.05 0.94 4.40 -51.93 -0.23 0.71 15
24 H 0.27 8.01 8.72 -40.82 -0.36 7.66 15
25 H 0.16 2.69 8.06 -52.49 -0.42 2.27 15
26 H 0.17 2.24 8.06 -52.49 -0.42 1.81 15
27 H 0.21 2.08 8.06 -52.49 -0.42 1.65 15
28 H 0.18 2.63 7.88 -52.49 -0.41 2.22 15
LS Contribution 244.03 15.07 3.68 3.68
Total: -1.00 -31.19 244.03 -5.73 -36.92
By element:
Atomic # 1 Polarization: 3.85 SS G_CDS: -2.71 Total: 1.14 kcal
Atomic # 6 Polarization: -12.06 SS G_CDS: -3.31 Total: -15.37 kcal
Atomic # 7 Polarization: -47.29 SS G_CDS: 0.92 Total: -46.37 kcal
Atomic # 14 Polarization: 24.31 SS G_CDS: -4.30 Total: 20.01 kcal
Total LS contribution 3.68 Total: 3.68 kcal
Total: -31.19 -5.73 -36.92 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261244537.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.191 kcal
(2) G-P(sol) polarization free energy of solvation -31.189 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal
(6) G-S(sol) free energy of system = (1) + (5) 113.275 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds