Wall clock time and date at job start Mon Mar 30 2020 03:10:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08993 * 109.47222 * 2 1
4 4 C 1.50700 * 109.46821 * 239.99933 * 2 1 3
5 5 H 1.08002 * 120.00328 * 245.37331 * 4 2 1
6 6 C 1.37887 * 119.99859 * 65.37712 * 4 2 1
7 7 N 1.31510 * 119.99853 * 185.16312 * 6 4 2
8 8 Si 1.86799 * 119.99794 * 5.16636 * 6 4 2
9 9 H 1.48504 * 109.46957 * 269.99682 * 8 6 4
10 10 H 1.48497 * 109.47231 * 30.00003 * 8 6 4
11 11 H 1.48497 * 109.46961 * 150.00008 * 8 6 4
12 12 C 1.50700 * 109.46902 * 120.00775 * 2 1 3
13 13 C 1.39449 * 126.58919 * 59.68701 * 12 2 1
14 14 C 1.36001 * 107.99908 * 179.83423 * 13 12 2
15 15 N 1.34503 * 109.16735 * 0.43594 * 14 13 12
16 16 N 1.40222 * 133.27806 * 179.73405 * 15 14 13
17 17 C 1.30476 * 119.80499 * 179.97438 * 16 15 14
18 18 N 1.33279 * 122.19567 * 359.97438 * 17 16 15
19 19 C 1.31463 * 121.78303 * 0.02562 * 18 17 16
20 20 C 1.38409 * 126.57998 * 239.99451 * 12 2 1
21 21 H 1.09000 * 109.47428 * 174.96097 * 1 2 3
22 22 H 1.09005 * 109.47152 * 294.96103 * 1 2 3
23 23 H 1.08996 * 109.47341 * 54.95991 * 1 2 3
24 24 H 0.97000 * 120.00170 * 355.00052 * 7 6 4
25 25 H 1.07998 * 125.99480 * 359.95868 * 13 12 2
26 26 H 1.08000 * 125.41547 * 180.16388 * 14 13 12
27 27 H 1.07995 * 118.90645 * 180.02562 * 17 16 15
28 28 H 1.07997 * 120.30290 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.5797 -1.6364 -1.1338
6 6 1.7929 -0.1782 -2.4798
7 7 2.1411 -0.8472 -3.5572
8 14 0.9742 1.4929 -2.6418
9 1 -0.4991 1.3181 -2.7073
10 1 1.3216 2.3305 -1.4658
11 1 1.4492 2.1587 -3.8813
12 6 2.0323 -0.7106 1.2304
13 6 1.7765 -2.0338 1.5887
14 6 2.4155 -2.2821 2.7633
15 7 3.0541 -1.1678 3.1628
16 7 3.8459 -0.8613 4.2787
17 6 4.3489 0.3357 4.4081
18 7 4.1380 1.2956 3.5079
19 6 3.4078 1.0898 2.4343
20 6 2.8312 -0.1734 2.2248
21 1 -0.3634 -1.0237 -0.0903
22 1 -0.3634 0.4337 0.9317
23 1 -0.3634 0.5900 -0.8414
24 1 2.6309 -1.6803 -3.4737
25 1 1.1779 -2.7382 1.0303
26 1 2.4075 -3.2230 3.2934
27 1 4.9570 0.5557 5.2730
28 1 3.2528 1.8848 1.7200
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261244537.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:29
Heat of formation + Delta-G solvation = 93.868782 kcal
Electronic energy + Delta-G solvation = -14052.132774 eV
Core-core repulsion = 11683.484166 eV
Total energy + Delta-G solvation = -2368.648607 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-43.09492 -39.30745 -36.59633 -34.74540 -33.25023 -31.35191 -29.62540 -26.66248
-25.98377 -24.13717 -23.07947 -20.56648 -19.84181 -19.12515 -18.42394 -16.81919
-16.72787 -15.81753 -15.42507 -14.82653 -14.65198 -14.43595 -14.03361 -13.92250
-13.68656 -13.18789 -12.86963 -12.46040 -12.17094 -12.10818 -11.54847 -11.47895
-10.78390 -10.68556 -10.54977 -9.74389 -8.99658 -8.55896 -6.31134 -0.67702
0.39341 1.00608 1.52247 1.61492 1.77661 1.88446 2.41032 2.56568
3.07895 3.13505 3.19021 3.72438 4.05189 4.17219 4.39246 4.58834
4.67755 4.74900 4.90026 4.96464 5.10160 5.19905 5.34856 5.58204
5.68521 5.79405 6.05019 6.11328 6.18314 6.63442 6.99882 7.48385
8.74151
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.040267 B = 0.009180 C = 0.008402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 695.196531 B = 3049.418412 C = 3331.696554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.063 3.937
3 H 0.044 0.956
4 C -0.575 4.575
5 H 0.017 0.983
6 C -0.026 4.026
7 N -0.951 5.951
8 Si 1.089 2.911
9 H -0.263 1.263
10 H -0.240 1.240
11 H -0.299 1.299
12 C -0.035 4.035
13 C -0.190 4.190
14 C 0.056 3.944
15 N -0.273 5.273
16 N -0.349 5.349
17 C 0.286 3.714
18 N -0.577 5.577
19 C 0.283 3.717
20 C -0.143 4.143
21 H 0.047 0.953
22 H 0.057 0.943
23 H 0.044 0.956
24 H 0.249 0.751
25 H 0.157 0.843
26 H 0.205 0.795
27 H 0.257 0.743
28 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.523 3.611 14.233 14.693
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.043 3.957
3 H 0.062 0.938
4 C -0.613 4.613
5 H 0.035 0.965
6 C -0.222 4.222
7 N -0.588 5.588
8 Si 0.911 3.089
9 H -0.189 1.189
10 H -0.163 1.163
11 H -0.226 1.226
12 C -0.048 4.048
13 C -0.214 4.214
14 C -0.086 4.086
15 N -0.035 5.035
16 N -0.164 5.164
17 C -0.012 4.012
18 N -0.294 5.294
19 C 0.096 3.904
20 C -0.250 4.250
21 H 0.066 0.934
22 H 0.076 0.924
23 H 0.063 0.937
24 H 0.058 0.942
25 H 0.174 0.826
26 H 0.221 0.779
27 H 0.272 0.728
28 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -0.410 4.549 14.364 15.072
hybrid contribution 0.574 -1.971 0.066 2.054
sum 0.163 2.578 14.429 14.659
Atomic orbital electron populations
1.21977 0.96173 1.01194 1.00005 1.17830 0.93470 0.95484 0.88868
0.93825 1.22159 1.37967 1.08616 0.92569 0.96479 1.27235 0.96805
1.06457 0.91678 1.70951 1.39198 1.17009 1.31668 0.83498 0.76679
0.72005 0.76737 1.18894 1.16317 1.22640 1.20296 0.95764 0.94883
0.93889 1.21150 1.06175 0.97011 0.97102 1.22079 0.98181 0.90760
0.97584 1.45246 1.33465 1.10636 1.14173 1.75969 1.11986 1.23072
1.05409 1.26530 0.92957 0.83491 0.98199 1.68598 1.21117 1.34666
1.05039 1.23611 0.82215 0.92779 0.91794 1.20070 1.13401 0.94255
0.97226 0.93418 0.92448 0.93687 0.94168 0.82571 0.77859 0.72767
0.77919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.27 8.65 71.98 0.62 -4.64 15
2 C 0.06 2.76 2.26 -12.29 -0.03 2.73 15
3 H 0.04 1.82 6.35 -2.39 -0.02 1.80 15
4 C -0.57 -31.29 8.80 25.60 0.23 -31.07 15
5 H 0.02 1.04 7.94 -2.91 -0.02 1.01 15
6 C -0.03 -1.44 5.43 84.66 0.46 -0.98 15
7 N -0.95 -59.01 13.70 21.45 0.29 -58.72 15
8 Si 1.09 47.75 25.29 68.60 1.73 49.48 15
9 H -0.26 -10.68 6.81 99.48 0.68 -10.00 15
10 H -0.24 -8.94 6.36 99.48 0.63 -8.31 15
11 H -0.30 -13.47 7.11 99.48 0.71 -12.76 15
12 C -0.03 -1.41 4.86 -19.53 -0.09 -1.50 15
13 C -0.19 -6.99 10.42 22.04 0.23 -6.76 15
14 C 0.06 1.82 11.85 83.76 0.99 2.81 15
15 N -0.27 -9.60 3.99 -188.17 -0.75 -10.36 15
16 N -0.35 -10.89 11.98 -61.36 -0.74 -11.63 15
17 C 0.29 7.43 12.35 180.82 2.23 9.67 15
18 N -0.58 -16.75 10.40 -199.02 -2.07 -18.82 15
19 C 0.28 8.93 11.24 85.28 0.96 9.89 15
20 C -0.14 -5.29 6.80 38.66 0.26 -5.02 15
21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15
22 H 0.06 1.88 8.14 -2.38 -0.02 1.86 15
23 H 0.04 1.73 4.40 -2.39 -0.01 1.72 15
24 H 0.25 15.80 8.72 -92.71 -0.81 15.00 15
25 H 0.16 5.50 8.06 -2.91 -0.02 5.48 15
26 H 0.20 4.89 8.06 -2.91 -0.02 4.86 15
27 H 0.26 3.86 8.06 -2.91 -0.02 3.84 15
28 H 0.20 5.30 7.88 -2.91 -0.02 5.27 15
Total: -1.00 -68.67 244.03 5.36 -63.31
By element:
Atomic # 1 Polarization: 10.58 SS G_CDS: 1.03 Total: 11.61 kcal
Atomic # 6 Polarization: -30.75 SS G_CDS: 5.86 Total: -24.89 kcal
Atomic # 7 Polarization: -96.26 SS G_CDS: -3.26 Total: -99.52 kcal
Atomic # 14 Polarization: 47.75 SS G_CDS: 1.73 Total: 49.48 kcal
Total: -68.67 5.36 -63.31 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261244537.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 157.176 kcal
(2) G-P(sol) polarization free energy of solvation -68.669 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.507 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds