Wall clock time and date at job start Mon Mar 30 2020 03:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47222 * 2 1 4 4 C 1.50700 * 109.46821 * 239.99933 * 2 1 3 5 5 H 1.08002 * 120.00328 * 245.37331 * 4 2 1 6 6 C 1.37887 * 119.99859 * 65.37712 * 4 2 1 7 7 N 1.31510 * 119.99853 * 185.16312 * 6 4 2 8 8 Si 1.86799 * 119.99794 * 5.16636 * 6 4 2 9 9 H 1.48504 * 109.46957 * 269.99682 * 8 6 4 10 10 H 1.48497 * 109.47231 * 30.00003 * 8 6 4 11 11 H 1.48497 * 109.46961 * 150.00008 * 8 6 4 12 12 C 1.50700 * 109.46902 * 120.00775 * 2 1 3 13 13 C 1.39449 * 126.58919 * 59.68701 * 12 2 1 14 14 C 1.36001 * 107.99908 * 179.83423 * 13 12 2 15 15 N 1.34503 * 109.16735 * 0.43594 * 14 13 12 16 16 N 1.40222 * 133.27806 * 179.73405 * 15 14 13 17 17 C 1.30476 * 119.80499 * 179.97438 * 16 15 14 18 18 N 1.33279 * 122.19567 * 359.97438 * 17 16 15 19 19 C 1.31463 * 121.78303 * 0.02562 * 18 17 16 20 20 C 1.38409 * 126.57998 * 239.99451 * 12 2 1 21 21 H 1.09000 * 109.47428 * 174.96097 * 1 2 3 22 22 H 1.09005 * 109.47152 * 294.96103 * 1 2 3 23 23 H 1.08996 * 109.47341 * 54.95991 * 1 2 3 24 24 H 0.97000 * 120.00170 * 355.00052 * 7 6 4 25 25 H 1.07998 * 125.99480 * 359.95868 * 13 12 2 26 26 H 1.08000 * 125.41547 * 180.16388 * 14 13 12 27 27 H 1.07995 * 118.90645 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.30290 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1338 6 6 1.7929 -0.1782 -2.4798 7 7 2.1411 -0.8472 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4991 1.3181 -2.7073 10 1 1.3216 2.3305 -1.4658 11 1 1.4492 2.1587 -3.8813 12 6 2.0323 -0.7106 1.2304 13 6 1.7765 -2.0338 1.5887 14 6 2.4155 -2.2821 2.7633 15 7 3.0541 -1.1678 3.1628 16 7 3.8459 -0.8613 4.2787 17 6 4.3489 0.3357 4.4081 18 7 4.1380 1.2956 3.5079 19 6 3.4078 1.0898 2.4343 20 6 2.8312 -0.1734 2.2248 21 1 -0.3634 -1.0237 -0.0903 22 1 -0.3634 0.4337 0.9317 23 1 -0.3634 0.5900 -0.8414 24 1 2.6309 -1.6803 -3.4737 25 1 1.1779 -2.7382 1.0303 26 1 2.4075 -3.2230 3.2934 27 1 4.9570 0.5557 5.2730 28 1 3.2528 1.8848 1.7200 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:29 Heat of formation + Delta-G solvation = 93.868782 kcal Electronic energy + Delta-G solvation = -14052.132774 eV Core-core repulsion = 11683.484166 eV Total energy + Delta-G solvation = -2368.648607 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.09492 -39.30745 -36.59633 -34.74540 -33.25023 -31.35191 -29.62540 -26.66248 -25.98377 -24.13717 -23.07947 -20.56648 -19.84181 -19.12515 -18.42394 -16.81919 -16.72787 -15.81753 -15.42507 -14.82653 -14.65198 -14.43595 -14.03361 -13.92250 -13.68656 -13.18789 -12.86963 -12.46040 -12.17094 -12.10818 -11.54847 -11.47895 -10.78390 -10.68556 -10.54977 -9.74389 -8.99658 -8.55896 -6.31134 -0.67702 0.39341 1.00608 1.52247 1.61492 1.77661 1.88446 2.41032 2.56568 3.07895 3.13505 3.19021 3.72438 4.05189 4.17219 4.39246 4.58834 4.67755 4.74900 4.90026 4.96464 5.10160 5.19905 5.34856 5.58204 5.68521 5.79405 6.05019 6.11328 6.18314 6.63442 6.99882 7.48385 8.74151 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040267 B = 0.009180 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.196531 B = 3049.418412 C = 3331.696554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.575 4.575 5 H 0.017 0.983 6 C -0.026 4.026 7 N -0.951 5.951 8 Si 1.089 2.911 9 H -0.263 1.263 10 H -0.240 1.240 11 H -0.299 1.299 12 C -0.035 4.035 13 C -0.190 4.190 14 C 0.056 3.944 15 N -0.273 5.273 16 N -0.349 5.349 17 C 0.286 3.714 18 N -0.577 5.577 19 C 0.283 3.717 20 C -0.143 4.143 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.249 0.751 25 H 0.157 0.843 26 H 0.205 0.795 27 H 0.257 0.743 28 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 3.611 14.233 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.043 3.957 3 H 0.062 0.938 4 C -0.613 4.613 5 H 0.035 0.965 6 C -0.222 4.222 7 N -0.588 5.588 8 Si 0.911 3.089 9 H -0.189 1.189 10 H -0.163 1.163 11 H -0.226 1.226 12 C -0.048 4.048 13 C -0.214 4.214 14 C -0.086 4.086 15 N -0.035 5.035 16 N -0.164 5.164 17 C -0.012 4.012 18 N -0.294 5.294 19 C 0.096 3.904 20 C -0.250 4.250 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.174 0.826 26 H 0.221 0.779 27 H 0.272 0.728 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.410 4.549 14.364 15.072 hybrid contribution 0.574 -1.971 0.066 2.054 sum 0.163 2.578 14.429 14.659 Atomic orbital electron populations 1.21977 0.96173 1.01194 1.00005 1.17830 0.93470 0.95484 0.88868 0.93825 1.22159 1.37967 1.08616 0.92569 0.96479 1.27235 0.96805 1.06457 0.91678 1.70951 1.39198 1.17009 1.31668 0.83498 0.76679 0.72005 0.76737 1.18894 1.16317 1.22640 1.20296 0.95764 0.94883 0.93889 1.21150 1.06175 0.97011 0.97102 1.22079 0.98181 0.90760 0.97584 1.45246 1.33465 1.10636 1.14173 1.75969 1.11986 1.23072 1.05409 1.26530 0.92957 0.83491 0.98199 1.68598 1.21117 1.34666 1.05039 1.23611 0.82215 0.92779 0.91794 1.20070 1.13401 0.94255 0.97226 0.93418 0.92448 0.93687 0.94168 0.82571 0.77859 0.72767 0.77919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.65 71.98 0.62 -4.64 15 2 C 0.06 2.76 2.26 -12.29 -0.03 2.73 15 3 H 0.04 1.82 6.35 -2.39 -0.02 1.80 15 4 C -0.57 -31.29 8.80 25.60 0.23 -31.07 15 5 H 0.02 1.04 7.94 -2.91 -0.02 1.01 15 6 C -0.03 -1.44 5.43 84.66 0.46 -0.98 15 7 N -0.95 -59.01 13.70 21.45 0.29 -58.72 15 8 Si 1.09 47.75 25.29 68.60 1.73 49.48 15 9 H -0.26 -10.68 6.81 99.48 0.68 -10.00 15 10 H -0.24 -8.94 6.36 99.48 0.63 -8.31 15 11 H -0.30 -13.47 7.11 99.48 0.71 -12.76 15 12 C -0.03 -1.41 4.86 -19.53 -0.09 -1.50 15 13 C -0.19 -6.99 10.42 22.04 0.23 -6.76 15 14 C 0.06 1.82 11.85 83.76 0.99 2.81 15 15 N -0.27 -9.60 3.99 -188.17 -0.75 -10.36 15 16 N -0.35 -10.89 11.98 -61.36 -0.74 -11.63 15 17 C 0.29 7.43 12.35 180.82 2.23 9.67 15 18 N -0.58 -16.75 10.40 -199.02 -2.07 -18.82 15 19 C 0.28 8.93 11.24 85.28 0.96 9.89 15 20 C -0.14 -5.29 6.80 38.66 0.26 -5.02 15 21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.06 1.88 8.14 -2.38 -0.02 1.86 15 23 H 0.04 1.73 4.40 -2.39 -0.01 1.72 15 24 H 0.25 15.80 8.72 -92.71 -0.81 15.00 15 25 H 0.16 5.50 8.06 -2.91 -0.02 5.48 15 26 H 0.20 4.89 8.06 -2.91 -0.02 4.86 15 27 H 0.26 3.86 8.06 -2.91 -0.02 3.84 15 28 H 0.20 5.30 7.88 -2.91 -0.02 5.27 15 Total: -1.00 -68.67 244.03 5.36 -63.31 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.03 Total: 11.61 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 5.86 Total: -24.89 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.26 Total: -99.52 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.73 Total: 49.48 kcal Total: -68.67 5.36 -63.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.176 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds