Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33625 * 125.68343 * 2 1 4 4 C 1.32608 * 109.37943 * 179.97438 * 3 2 1 5 5 N 1.34344 * 130.90893 * 180.02562 * 4 3 2 6 6 C 1.30764 * 121.59224 * 179.97438 * 5 4 3 7 7 C 1.46584 * 119.41796 * 0.25502 * 6 5 4 8 8 C 1.41363 * 120.97009 * 179.72299 * 7 6 5 9 9 H 1.08001 * 120.00324 * 156.64103 * 8 7 6 10 10 C 1.39777 * 119.99649 * 336.65046 * 8 7 6 11 11 N 1.30950 * 120.00166 * 343.33762 * 10 8 7 12 12 Si 1.86799 * 119.99814 * 163.34039 * 10 8 7 13 13 H 1.48505 * 109.47325 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47226 * 119.99811 * 12 10 8 15 15 H 1.48496 * 109.47280 * 239.99798 * 12 10 8 16 16 C 1.39669 * 118.06398 * 359.51292 * 7 6 5 17 17 N 1.35961 * 118.70649 * 0.46179 * 16 7 6 18 18 C 1.34904 * 125.68239 * 179.97438 * 2 1 3 19 19 C 1.50697 * 126.48843 * 0.07791 * 18 2 1 20 20 H 1.08995 * 109.47668 * 270.04641 * 1 2 3 21 21 H 1.09000 * 109.47198 * 30.05148 * 1 2 3 22 22 H 1.09002 * 109.46982 * 150.04440 * 1 2 3 23 23 H 1.08000 * 120.29459 * 179.97438 * 6 5 4 24 24 H 0.96998 * 119.99824 * 180.02562 * 11 10 8 25 25 H 1.07999 * 120.64205 * 180.26310 * 16 7 6 26 26 H 1.08997 * 109.46851 * 269.95604 * 19 18 2 27 27 H 1.08997 * 109.47338 * 29.95133 * 19 18 2 28 28 H 1.09001 * 109.47383 * 149.95875 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.0854 0.0000 4 6 3.5592 0.7131 0.0006 5 7 4.6886 1.4406 0.0012 6 6 5.8676 0.8752 0.0022 7 6 5.9647 -0.5875 -0.0031 8 6 7.2223 -1.2330 -0.0081 9 1 7.3115 -2.2448 0.3590 10 6 8.3505 -0.5617 -0.4880 11 7 8.2097 0.5132 -1.2225 12 14 10.0591 -1.1980 -0.0816 13 1 9.9464 -2.4188 0.7565 14 1 10.7772 -1.5263 -1.3393 15 1 10.8122 -0.1553 0.6606 16 6 4.7785 -1.3248 0.0014 17 7 3.5943 -0.6567 0.0009 18 6 2.2938 -1.0958 0.0005 19 6 1.8324 -2.5304 -0.0005 20 1 -0.3634 0.0008 1.0276 21 1 -0.3633 0.8895 -0.5146 22 1 -0.3633 -0.8904 -0.5132 23 1 6.7621 1.4804 0.0023 24 1 8.9927 0.9788 -1.5558 25 1 4.8015 -2.4045 0.0021 26 1 1.7208 -2.8768 1.0269 27 1 0.8741 -2.6035 -0.5147 28 1 2.5686 -3.1485 -0.5144 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261248053.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = 73.173748 kcal Electronic energy + Delta-G solvation = -13946.879492 eV Core-core repulsion = 11577.333481 eV Total energy + Delta-G solvation = -2369.546011 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52956 -36.97457 -34.14418 -33.31668 -31.39121 -30.24481 -28.15735 -25.42167 -25.17273 -21.90048 -21.56060 -19.34492 -17.78710 -16.61157 -15.94242 -15.34400 -15.14845 -14.18468 -13.40006 -12.98839 -12.81570 -12.53069 -12.49163 -12.15769 -11.80708 -11.68991 -11.57354 -11.43908 -11.29579 -10.70155 -10.56797 -10.27382 -9.55578 -9.24145 -8.49077 -7.78702 -7.29136 -6.83684 -4.78704 2.03773 2.34733 2.85546 2.88114 2.93066 3.59678 3.66431 3.88323 4.35770 4.82607 5.12007 5.54259 5.66290 5.75779 5.83441 5.87393 5.95273 6.13886 6.17614 6.26272 6.42723 6.60415 6.72416 6.79197 7.18364 7.55058 7.63684 7.76254 7.87824 8.24661 8.35923 8.88894 9.24438 9.70930 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.058866 B = 0.007820 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.545291 B = 3579.500100 C = 3975.434847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.036 3.964 3 N -0.499 5.499 4 C 0.327 3.673 5 N -0.466 5.466 6 C 0.186 3.814 7 C 0.047 3.953 8 C -0.428 4.428 9 H 0.092 0.908 10 C 0.073 3.927 11 N -0.788 5.788 12 Si 0.925 3.075 13 H -0.257 1.257 14 H -0.270 1.270 15 H -0.266 1.266 16 C -0.145 4.145 17 N -0.328 5.328 18 C -0.111 4.111 19 C -0.056 4.056 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.182 0.818 24 H 0.293 0.707 25 H 0.139 0.861 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -4.881 1.418 5.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.102 4.102 3 N -0.223 5.223 4 C -0.020 4.020 5 N -0.176 5.176 6 C -0.006 4.006 7 C 0.041 3.959 8 C -0.458 4.458 9 H 0.110 0.890 10 C -0.148 4.148 11 N -0.412 5.412 12 Si 0.748 3.252 13 H -0.180 1.180 14 H -0.195 1.195 15 H -0.191 1.191 16 C -0.275 4.275 17 N 0.002 4.998 18 C -0.229 4.229 19 C -0.114 4.114 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.199 0.801 24 H 0.104 0.896 25 H 0.157 0.843 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.507 -3.035 1.271 4.137 hybrid contribution 1.345 -1.955 0.016 2.373 sum -1.162 -4.991 1.288 5.283 Atomic orbital electron populations 1.19940 0.88221 1.01887 1.01495 1.20219 0.95709 0.87939 1.06370 1.70284 0.97379 1.28767 1.25886 1.21396 0.92879 0.77345 1.10341 1.67543 0.96455 1.36758 1.16889 1.25168 0.93039 0.93210 0.89213 1.19243 0.92434 0.91950 0.92296 1.19393 0.90318 1.01271 1.34775 0.89007 1.26075 1.02635 0.94094 0.91953 1.69733 1.34065 1.15415 1.22012 0.85961 0.79496 0.80220 0.79507 1.18045 1.19516 1.19111 1.21635 0.81805 0.96930 1.27128 1.42993 1.05566 1.09604 1.41678 1.20484 0.82432 0.96951 1.23038 1.19919 1.00546 0.89658 1.01236 0.91932 0.91645 0.91801 0.80148 0.89578 0.84325 0.92410 0.91134 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.21 36.00 0.37 -0.55 15 2 C 0.04 0.79 7.06 -83.00 -0.59 0.20 15 3 N -0.50 -12.92 11.31 -10.63 -0.12 -13.04 15 4 C 0.33 8.82 8.88 -322.21 -2.86 5.96 15 5 N -0.47 -12.47 10.43 -11.98 -0.12 -12.60 15 6 C 0.19 4.68 10.15 -14.64 -0.15 4.53 15 7 C 0.05 1.17 5.71 -104.81 -0.60 0.57 15 8 C -0.43 -9.93 9.10 -37.82 -0.34 -10.27 15 9 H 0.09 2.01 7.90 -52.49 -0.41 1.59 15 10 C 0.07 1.57 5.22 -17.35 -0.09 1.48 15 11 N -0.79 -17.77 10.87 55.54 0.60 -17.16 15 12 Si 0.93 16.15 29.59 -169.99 -5.03 11.12 15 13 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 14 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 15 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15 16 C -0.14 -3.51 10.79 -15.19 -0.16 -3.68 15 17 N -0.33 -8.19 2.93 -59.07 -0.17 -8.37 15 18 C -0.11 -2.42 7.03 -81.35 -0.57 -2.99 15 19 C -0.06 -0.90 10.08 36.00 0.36 -0.54 15 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 22 H 0.06 0.84 7.13 -51.93 -0.37 0.47 15 23 H 0.18 4.32 6.25 -52.49 -0.33 4.00 15 24 H 0.29 5.90 8.30 -40.82 -0.34 5.56 15 25 H 0.14 3.04 8.06 -52.49 -0.42 2.62 15 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.07 0.95 7.14 -51.93 -0.37 0.58 15 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 248.01 15.07 3.74 3.74 Total: -1.00 -28.90 248.01 -8.47 -37.37 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -2.73 Total: 4.22 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -4.64 Total: -5.28 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.19 Total: -51.17 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -5.03 Total: 11.12 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.90 -8.47 -37.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248053.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.547 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds