Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33625 * 125.68343 * 2 1 4 4 C 1.32608 * 109.37943 * 179.97438 * 3 2 1 5 5 N 1.34344 * 130.90893 * 180.02562 * 4 3 2 6 6 C 1.30764 * 121.59224 * 179.97438 * 5 4 3 7 7 C 1.46584 * 119.41796 * 0.25502 * 6 5 4 8 8 C 1.41363 * 120.97009 * 179.72299 * 7 6 5 9 9 H 1.08001 * 120.00324 * 156.64103 * 8 7 6 10 10 C 1.39777 * 119.99649 * 336.65046 * 8 7 6 11 11 N 1.30950 * 120.00166 * 343.33762 * 10 8 7 12 12 Si 1.86799 * 119.99814 * 163.34039 * 10 8 7 13 13 H 1.48505 * 109.47325 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47226 * 119.99811 * 12 10 8 15 15 H 1.48496 * 109.47280 * 239.99798 * 12 10 8 16 16 C 1.39669 * 118.06398 * 359.51292 * 7 6 5 17 17 N 1.35961 * 118.70649 * 0.46179 * 16 7 6 18 18 C 1.34904 * 125.68239 * 179.97438 * 2 1 3 19 19 C 1.50697 * 126.48843 * 0.07791 * 18 2 1 20 20 H 1.08995 * 109.47668 * 270.04641 * 1 2 3 21 21 H 1.09000 * 109.47198 * 30.05148 * 1 2 3 22 22 H 1.09002 * 109.46982 * 150.04440 * 1 2 3 23 23 H 1.08000 * 120.29459 * 179.97438 * 6 5 4 24 24 H 0.96998 * 119.99824 * 180.02562 * 11 10 8 25 25 H 1.07999 * 120.64205 * 180.26310 * 16 7 6 26 26 H 1.08997 * 109.46851 * 269.95604 * 19 18 2 27 27 H 1.08997 * 109.47338 * 29.95133 * 19 18 2 28 28 H 1.09001 * 109.47383 * 149.95875 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.0854 0.0000 4 6 3.5592 0.7131 0.0006 5 7 4.6886 1.4406 0.0012 6 6 5.8676 0.8752 0.0022 7 6 5.9647 -0.5875 -0.0031 8 6 7.2223 -1.2330 -0.0081 9 1 7.3115 -2.2448 0.3590 10 6 8.3505 -0.5617 -0.4880 11 7 8.2097 0.5132 -1.2225 12 14 10.0591 -1.1980 -0.0816 13 1 9.9464 -2.4188 0.7565 14 1 10.7772 -1.5263 -1.3393 15 1 10.8122 -0.1553 0.6606 16 6 4.7785 -1.3248 0.0014 17 7 3.5943 -0.6567 0.0009 18 6 2.2938 -1.0958 0.0005 19 6 1.8324 -2.5304 -0.0005 20 1 -0.3634 0.0008 1.0276 21 1 -0.3633 0.8895 -0.5146 22 1 -0.3633 -0.8904 -0.5132 23 1 6.7621 1.4804 0.0023 24 1 8.9927 0.9788 -1.5558 25 1 4.8015 -2.4045 0.0021 26 1 1.7208 -2.8768 1.0269 27 1 0.8741 -2.6035 -0.5147 28 1 2.5686 -3.1485 -0.5144 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261248053.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = 58.211987 kcal Electronic energy + Delta-G solvation = -13947.528282 eV Core-core repulsion = 11577.333481 eV Total energy + Delta-G solvation = -2370.194802 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.31551 -38.78501 -35.89401 -35.12946 -32.95048 -31.97994 -29.60800 -27.11543 -26.92940 -23.67278 -23.34448 -21.05784 -19.54457 -18.43630 -17.71656 -17.04416 -16.89216 -15.87711 -15.01858 -14.44844 -14.28692 -14.07012 -13.86645 -13.72086 -13.36579 -13.21638 -13.10078 -12.89236 -12.80497 -12.48064 -12.09216 -11.90656 -11.21447 -11.05698 -10.37651 -9.61392 -8.97160 -8.58266 -6.59096 0.17781 0.55651 1.42379 1.47329 1.60879 1.99232 2.08618 2.19884 2.58046 3.06192 3.25676 3.96106 4.01940 4.15457 4.31196 4.42324 4.72557 4.76559 4.85402 4.93614 4.96656 5.04784 5.12927 5.17385 5.43704 5.77889 5.83471 6.06604 6.11316 6.47133 6.56868 7.05478 7.38592 8.06195 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.058866 B = 0.007820 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.545291 B = 3579.500100 C = 3975.434847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.023 3.977 3 N -0.531 5.531 4 C 0.277 3.723 5 N -0.489 5.489 6 C 0.174 3.826 7 C 0.026 3.974 8 C -0.440 4.440 9 H 0.103 0.897 10 C 0.038 3.962 11 N -0.812 5.812 12 Si 1.002 2.998 13 H -0.252 1.252 14 H -0.265 1.265 15 H -0.260 1.260 16 C -0.167 4.167 17 N -0.334 5.334 18 C -0.116 4.116 19 C -0.052 4.052 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.184 0.816 24 H 0.305 0.695 25 H 0.158 0.842 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -6.799 1.556 7.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.114 4.114 3 N -0.257 5.257 4 C -0.068 4.068 5 N -0.201 5.201 6 C -0.018 4.018 7 C 0.019 3.981 8 C -0.469 4.469 9 H 0.121 0.879 10 C -0.180 4.180 11 N -0.437 5.437 12 Si 0.821 3.179 13 H -0.175 1.175 14 H -0.189 1.189 15 H -0.184 1.184 16 C -0.296 4.296 17 N -0.005 5.005 18 C -0.233 4.233 19 C -0.110 4.110 20 H 0.100 0.900 21 H 0.085 0.915 22 H 0.117 0.883 23 H 0.201 0.799 24 H 0.116 0.884 25 H 0.175 0.825 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.528 -4.949 1.405 5.732 hybrid contribution 1.307 -1.352 -0.064 1.881 sum -1.221 -6.301 1.342 6.557 Atomic orbital electron populations 1.20135 0.84002 1.03683 1.03273 1.21284 0.98268 0.86953 1.04933 1.70253 0.97609 1.30934 1.26876 1.21597 0.93219 0.78631 1.13369 1.67435 0.97144 1.37911 1.17596 1.25253 0.92766 0.93875 0.89912 1.19547 0.93635 0.91895 0.92977 1.19749 0.90452 1.01974 1.34696 0.87886 1.27010 1.06185 0.93868 0.90943 1.69757 1.35970 1.16084 1.21853 0.84835 0.74038 0.79718 0.79341 1.17523 1.18935 1.18443 1.21892 0.81735 0.97655 1.28364 1.43186 1.06824 1.09115 1.41399 1.21572 0.81146 0.99675 1.20934 1.20121 1.02006 0.85881 1.02973 0.90011 0.91521 0.88340 0.79917 0.88382 0.82490 0.90534 0.87701 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.54 10.21 71.23 0.73 -0.82 15 2 C 0.02 1.00 7.06 41.52 0.29 1.29 15 3 N -0.53 -28.04 11.31 -187.56 -2.12 -30.16 15 4 C 0.28 15.44 8.88 261.28 2.32 17.76 15 5 N -0.49 -27.46 10.43 -191.81 -2.00 -29.46 15 6 C 0.17 9.11 10.15 87.03 0.88 9.99 15 7 C 0.03 1.32 5.71 -19.99 -0.11 1.21 15 8 C -0.44 -20.35 9.10 23.41 0.21 -20.13 15 9 H 0.10 4.41 7.90 -2.91 -0.02 4.39 15 10 C 0.04 1.63 5.22 85.20 0.45 2.07 15 11 N -0.81 -36.57 10.87 21.80 0.24 -36.34 15 12 Si 1.00 31.66 29.59 68.60 2.03 33.69 15 13 H -0.25 -7.74 7.11 99.48 0.71 -7.03 15 14 H -0.26 -8.13 7.11 99.48 0.71 -7.43 15 15 H -0.26 -7.94 7.11 99.48 0.71 -7.23 15 16 C -0.17 -8.19 10.79 84.40 0.91 -7.28 15 17 N -0.33 -16.90 2.93 -340.81 -1.00 -17.90 15 18 C -0.12 -4.90 7.03 40.94 0.29 -4.62 15 19 C -0.05 -1.52 10.08 71.23 0.72 -0.80 15 20 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 22 H 0.10 2.15 7.13 -2.39 -0.02 2.13 15 23 H 0.18 9.16 6.25 -2.91 -0.02 9.14 15 24 H 0.30 12.09 8.30 -92.71 -0.77 11.32 15 25 H 0.16 6.85 8.06 -2.91 -0.02 6.83 15 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.10 2.32 7.14 -2.39 -0.02 2.31 15 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 Total: -1.00 -64.53 248.01 5.01 -59.53 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.18 Total: 21.97 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 6.68 Total: -1.32 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.88 Total: -113.86 kcal Atomic # 14 Polarization: 31.66 SS G_CDS: 2.03 Total: 33.69 kcal Total: -64.53 5.01 -59.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261248053.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.740 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds