Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31218 * 119.85510 * 2 1 4 4 C 1.33984 * 120.81076 * 179.97438 * 3 2 1 5 5 C 1.38863 * 132.57376 * 180.02562 * 4 3 2 6 6 C 1.38658 * 107.64619 * 179.97438 * 5 4 3 7 7 N 1.31417 * 108.99220 * 0.02562 * 6 5 4 8 8 N 1.37158 * 120.54127 * 0.02562 * 4 3 2 9 9 C 1.36524 * 119.78864 * 0.02562 * 8 4 3 10 10 C 1.35528 * 119.12495 * 359.97438 * 9 8 4 11 11 C 1.50695 * 120.27325 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47417 * 265.00391 * 11 10 9 13 13 H 1.07999 * 119.99411 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00192 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99905 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00324 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47383 * 90.00176 * 16 14 12 18 18 H 1.48501 * 109.47403 * 210.00421 * 16 14 12 19 19 H 1.48505 * 109.47062 * 330.00287 * 16 14 12 20 20 H 1.09003 * 109.46726 * 90.00404 * 1 2 3 21 21 H 1.09002 * 109.46581 * 209.99776 * 1 2 3 22 22 H 1.08999 * 109.47488 * 329.99870 * 1 2 3 23 23 H 1.08003 * 126.17826 * 359.96547 * 5 4 3 24 24 H 1.07998 * 125.50431 * 180.02562 * 6 5 4 25 25 H 1.08007 * 120.44084 * 179.97438 * 9 8 4 26 26 H 1.08999 * 109.47550 * 25.00318 * 11 10 9 27 27 H 1.09004 * 109.47158 * 145.00472 * 11 10 9 28 28 H 0.97009 * 119.99897 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1602 1.1380 0.0000 4 6 3.4999 1.1604 0.0005 5 6 4.4222 2.1985 0.0011 6 6 5.6891 1.6352 0.0020 7 7 5.5751 0.3260 0.0015 8 7 4.2165 -0.0091 0.0005 9 6 3.5606 -1.2065 -0.0005 10 6 2.2053 -1.2162 -0.0010 11 6 1.4550 -2.5230 -0.0028 12 6 1.0980 -2.8955 -1.4187 13 1 1.3861 -2.2506 -2.2357 14 6 0.4037 -4.0596 -1.6712 15 7 0.0918 -4.3844 -2.9069 16 14 -0.0940 -5.1755 -0.2583 17 1 -1.4353 -4.7765 0.2388 18 1 -0.1398 -6.5825 -0.7310 19 1 0.8973 -5.0546 0.8408 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 4.1939 3.2541 0.0007 24 1 6.6195 2.1837 0.0031 25 1 4.1143 -2.1338 -0.0009 26 1 2.0815 -3.3024 0.4309 27 1 0.5437 -2.4196 0.5864 28 1 -0.3965 -5.2036 -3.0846 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = 89.085883 kcal Electronic energy + Delta-G solvation = -13899.327251 eV Core-core repulsion = 11530.471242 eV Total energy + Delta-G solvation = -2368.856009 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.23616 -39.54601 -35.79599 -34.88273 -33.65578 -31.36942 -29.16114 -28.94061 -25.40094 -23.94096 -22.63080 -22.17599 -19.46158 -18.99245 -17.56715 -17.00581 -16.52529 -16.16521 -15.32755 -14.97230 -14.63252 -14.52200 -14.09043 -13.93963 -13.57599 -12.94935 -12.87996 -12.62698 -12.34031 -12.23461 -12.00351 -11.79218 -11.56445 -10.81529 -10.72881 -10.12471 -8.82209 -8.26186 -6.33497 -0.42502 -0.01805 1.13691 1.44542 1.47005 1.56697 1.70183 2.39476 2.41162 2.84515 3.08989 3.26842 3.47445 3.90920 4.12672 4.36670 4.42163 4.58212 4.72678 4.81515 4.85919 4.99832 5.04449 5.27012 5.37562 5.47787 5.55601 5.65646 6.24254 6.47606 6.65607 6.72274 7.30607 8.90058 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045682 B = 0.008057 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.788564 B = 3474.397680 C = 3721.003779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.215 3.785 3 N -0.495 5.495 4 C 0.228 3.772 5 C -0.285 4.285 6 C 0.094 3.906 7 N -0.354 5.354 8 N -0.322 5.322 9 C 0.132 3.868 10 C -0.145 4.145 11 C 0.039 3.961 12 C -0.519 4.519 13 H 0.024 0.976 14 C 0.015 3.985 15 N -0.948 5.948 16 Si 0.945 3.055 17 H -0.259 1.259 18 H -0.292 1.292 19 H -0.238 1.238 20 H 0.086 0.914 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.180 0.820 24 H 0.241 0.759 25 H 0.188 0.812 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 8.189 9.381 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.052 3.948 3 N -0.208 5.208 4 C 0.000 4.000 5 C -0.316 4.316 6 C -0.083 4.083 7 N -0.179 5.179 8 N -0.093 5.093 9 C -0.001 4.001 10 C -0.151 4.151 11 C 0.001 3.999 12 C -0.556 4.556 13 H 0.043 0.957 14 C -0.182 4.182 15 N -0.588 5.588 16 Si 0.768 3.232 17 H -0.183 1.183 18 H -0.219 1.219 19 H -0.161 1.161 20 H 0.104 0.896 21 H 0.117 0.883 22 H 0.116 0.884 23 H 0.197 0.803 24 H 0.257 0.743 25 H 0.205 0.795 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.706 7.920 9.280 13.076 hybrid contribution -0.243 -0.742 -0.271 0.827 sum 4.462 7.178 9.008 12.352 Atomic orbital electron populations 1.20898 0.85281 1.05097 1.04444 1.22311 0.99216 0.86735 0.86546 1.68111 1.04257 1.29081 1.19382 1.21363 0.88951 0.88046 1.01659 1.21272 0.89553 0.99073 1.21712 1.24486 1.00117 0.90077 0.93653 1.77749 0.89536 1.17475 1.33130 1.47269 1.07587 1.06509 1.47912 1.22112 0.92447 0.88539 0.96984 1.20654 0.92089 0.99128 1.03220 1.18579 0.96211 0.88607 0.96512 1.20974 1.36290 1.06740 0.91639 0.95740 1.25891 0.95049 0.99063 0.98237 1.70060 1.41105 1.25799 1.21856 0.85737 0.80400 0.77306 0.79765 1.18318 1.21861 1.16117 0.89557 0.88267 0.88386 0.80316 0.74348 0.79503 0.93611 0.92130 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.06 9.80 71.24 0.70 -2.36 15 2 C 0.21 7.95 6.83 43.14 0.29 8.25 15 3 N -0.49 -18.78 10.40 -180.67 -1.88 -20.66 15 4 C 0.23 8.56 7.92 133.14 1.05 9.61 15 5 C -0.29 -8.56 10.91 22.52 0.25 -8.32 15 6 C 0.09 2.51 11.94 84.86 1.01 3.52 15 7 N -0.35 -12.24 12.66 -57.51 -0.73 -12.97 15 8 N -0.32 -12.29 3.90 -192.50 -0.75 -13.04 15 9 C 0.13 4.97 10.93 83.34 0.91 5.88 15 10 C -0.14 -5.61 5.05 -20.01 -0.10 -5.71 15 11 C 0.04 1.60 3.70 29.10 0.11 1.70 15 12 C -0.52 -26.94 9.65 25.60 0.25 -26.69 15 13 H 0.02 1.47 7.98 -2.91 -0.02 1.44 15 14 C 0.02 0.82 5.47 84.65 0.46 1.28 15 15 N -0.95 -56.04 13.96 21.45 0.30 -55.74 15 16 Si 0.95 39.24 27.47 68.60 1.88 41.12 15 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 18 H -0.29 -12.43 7.11 99.48 0.71 -11.72 15 19 H -0.24 -8.83 6.54 99.48 0.65 -8.18 15 20 H 0.09 2.80 8.14 -2.39 -0.02 2.78 15 21 H 0.10 2.83 6.09 -2.39 -0.01 2.82 15 22 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.18 4.30 8.06 -2.91 -0.02 4.28 15 24 H 0.24 3.65 8.06 -2.91 -0.02 3.63 15 25 H 0.19 6.27 8.06 -2.91 -0.02 6.25 15 26 H 0.05 1.76 7.11 -2.39 -0.02 1.75 15 27 H 0.06 2.22 5.66 -2.39 -0.01 2.21 15 28 H 0.27 14.79 8.31 -92.70 -0.77 14.02 15 Total: -1.00 -66.69 246.95 4.88 -61.82 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.12 Total: 12.31 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.93 Total: -12.84 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -3.06 Total: -102.41 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.88 Total: 41.12 kcal Total: -66.69 4.88 -61.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.902 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds