Wall clock time and date at job start Mon Mar 30 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36753 * 125.02396 * 2 1 4 4 C 1.34337 * 109.96869 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.51604 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47435 * 264.98382 * 5 4 3 7 7 H 1.07999 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00215 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99777 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47350 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47292 * 119.99947 * 10 8 6 13 13 H 1.48501 * 109.47187 * 239.99890 * 10 8 6 14 14 C 1.46352 * 106.96718 * 0.02562 * 4 3 2 15 15 N 1.32954 * 134.02080 * 180.02562 * 14 4 3 16 16 C 1.31916 * 119.64071 * 179.97438 * 15 14 4 17 17 C 1.38737 * 120.37793 * 359.97438 * 16 15 14 18 18 N 1.31964 * 120.64744 * 0.03552 * 17 16 15 19 19 C 1.32625 * 119.90151 * 359.97144 * 18 17 16 20 20 H 1.09007 * 109.47281 * 269.95932 * 1 2 3 21 21 H 1.09003 * 109.47219 * 29.95335 * 1 2 3 22 22 H 1.09000 * 109.47278 * 149.95874 * 1 2 3 23 23 H 1.07999 * 125.01508 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.46896 * 24.98450 * 5 4 3 25 25 H 1.09001 * 109.47448 * 144.97637 * 5 4 3 26 26 H 0.96997 * 120.00234 * 180.02562 * 9 8 6 27 27 H 1.08008 * 119.81068 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.67401 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2499 1.1199 0.0000 4 6 3.5471 0.7709 -0.0006 5 6 4.7276 1.7076 -0.0002 6 6 5.1981 1.9235 -1.4155 7 1 4.6930 1.4313 -2.2335 8 6 6.2740 2.7486 -1.6661 9 7 6.8894 3.3475 -0.6700 10 14 6.8575 3.0156 -3.4203 11 1 6.0036 2.2341 -4.3505 12 1 6.7663 4.4588 -3.7581 13 1 8.2671 2.5658 -3.5470 14 6 3.5959 -0.6918 -0.0016 15 7 4.5823 -1.5833 -0.0020 16 6 4.2975 -2.8713 -0.0025 17 6 2.9773 -3.2980 -0.0020 18 7 1.9881 -2.4245 -0.0017 19 6 2.2535 -1.1251 -0.0014 20 1 -0.3634 -0.0007 1.0277 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3634 -0.8896 -0.5145 23 1 1.8812 2.1350 0.0004 24 1 4.4334 2.6628 0.4346 25 1 5.5355 1.2738 0.5891 26 1 7.6460 3.9282 -0.8463 27 1 5.0966 -3.5979 -0.0032 28 1 2.7571 -4.3553 -0.0019 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254725.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:30 Heat of formation + Delta-G solvation = 83.443787 kcal Electronic energy + Delta-G solvation = -13820.350875 eV Core-core repulsion = 11451.250206 eV Total energy + Delta-G solvation = -2369.100669 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.41704 -38.20195 -34.34955 -33.07045 -31.75871 -29.68045 -28.19064 -25.62952 -23.87215 -23.15651 -21.97000 -19.00491 -17.29495 -16.89690 -16.24530 -15.60655 -15.41999 -14.41225 -14.37800 -13.62108 -13.42725 -12.57556 -12.51040 -12.31312 -11.91082 -11.37987 -11.14085 -11.01742 -10.94979 -10.61029 -10.44903 -9.74975 -9.32376 -8.42948 -8.30134 -8.11336 -7.34923 -5.94391 -3.96637 1.29658 1.60159 2.83934 3.21882 3.35012 3.42651 3.48288 4.33812 4.49232 4.53739 4.64453 4.87604 5.07085 5.29608 5.37610 5.41351 5.50414 5.56308 5.69230 6.06435 6.26913 6.81166 6.91416 7.33218 7.41285 7.65602 7.82211 7.95102 8.01435 8.39370 8.44703 9.06851 9.65822 11.15337 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.008627 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.060618 B = 3244.986863 C = 3674.066300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.474 5.474 3 C 0.036 3.964 4 C -0.083 4.083 5 C 0.081 3.919 6 C -0.502 4.502 7 H 0.053 0.947 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.062 3.938 15 N -0.384 5.384 16 C 0.016 3.984 17 C 0.069 3.931 18 N -0.463 5.463 19 C 0.231 3.769 20 H 0.065 0.935 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.180 0.820 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.164 0.836 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -8.310 1.860 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.162 5.162 3 C -0.088 4.088 4 C -0.090 4.090 5 C 0.044 3.956 6 C -0.540 4.540 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.077 4.077 15 N -0.097 5.097 16 C -0.153 4.153 17 C -0.099 4.099 18 N -0.183 5.183 19 C -0.006 4.006 20 H 0.083 0.917 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.197 0.803 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.181 0.819 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.056 -8.023 1.896 13.791 hybrid contribution 0.274 0.007 -1.017 1.054 sum -10.782 -8.016 0.878 13.464 Atomic orbital electron populations 1.21878 0.77184 1.03935 1.02621 1.43438 1.05800 1.03101 1.63875 1.21777 0.89488 0.90367 1.07155 1.21197 0.95593 0.89890 1.02349 1.17778 0.88708 0.91431 0.97709 1.21068 1.13992 1.26957 0.92003 0.92825 1.24965 0.96404 0.95915 0.97001 1.69958 1.21969 1.31008 1.30599 0.86519 0.78688 0.77692 0.85022 1.19889 1.21053 1.20970 1.20833 0.87926 0.95483 1.03480 1.67873 1.35006 1.01184 1.05678 1.23481 0.96731 0.92981 1.02144 1.23312 0.89399 0.98940 0.98260 1.67092 1.37065 0.99583 1.14542 1.19194 0.90390 0.87774 1.03254 0.91672 0.89953 0.90194 0.80334 0.95183 0.94650 0.93020 0.81875 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 11.08 59.85 0.66 1.66 15 2 N -0.47 -8.07 3.17 -123.60 -0.39 -8.46 15 3 C 0.04 0.66 11.20 -16.73 -0.19 0.47 15 4 C -0.08 -1.90 5.51 -102.74 -0.57 -2.46 15 5 C 0.08 2.15 5.51 -29.04 -0.16 1.99 15 6 C -0.50 -14.45 9.09 -34.44 -0.31 -14.77 15 7 H 0.05 1.56 7.74 -52.49 -0.41 1.16 15 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 9 N -0.90 -26.88 13.29 55.43 0.74 -26.14 15 10 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 15 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 14 C 0.06 1.38 7.49 -83.05 -0.62 0.76 15 15 N -0.38 -8.33 10.55 -9.71 -0.10 -8.43 15 16 C 0.02 0.25 11.21 -17.33 -0.19 0.06 15 17 C 0.07 1.02 11.19 -17.31 -0.19 0.83 15 18 N -0.46 -8.14 10.52 -12.12 -0.13 -8.27 15 19 C 0.23 4.51 7.90 -155.64 -1.23 3.28 15 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.08 0.76 8.13 -51.93 -0.42 0.34 15 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.18 2.69 8.06 -52.49 -0.42 2.26 15 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 27 H 0.16 2.00 8.06 -52.48 -0.42 1.58 15 28 H 0.17 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 254.93 15.07 3.84 3.84 Total: -1.00 -34.23 254.93 -6.89 -41.12 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -2.92 Total: -4.10 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.90 Total: -6.61 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.11 Total: -51.31 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.23 -6.89 -41.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254725.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.564 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds