Wall clock time and date at job start Mon Mar 30 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36753 * 125.02396 * 2 1 4 4 C 1.34337 * 109.96869 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.51604 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47435 * 264.98382 * 5 4 3 7 7 H 1.07999 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99888 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00215 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99777 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47350 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47292 * 119.99947 * 10 8 6 13 13 H 1.48501 * 109.47187 * 239.99890 * 10 8 6 14 14 C 1.46352 * 106.96718 * 0.02562 * 4 3 2 15 15 N 1.32954 * 134.02080 * 180.02562 * 14 4 3 16 16 C 1.31916 * 119.64071 * 179.97438 * 15 14 4 17 17 C 1.38737 * 120.37793 * 359.97438 * 16 15 14 18 18 N 1.31964 * 120.64744 * 0.03552 * 17 16 15 19 19 C 1.32625 * 119.90151 * 359.97144 * 18 17 16 20 20 H 1.09007 * 109.47281 * 269.95932 * 1 2 3 21 21 H 1.09003 * 109.47219 * 29.95335 * 1 2 3 22 22 H 1.09000 * 109.47278 * 149.95874 * 1 2 3 23 23 H 1.07999 * 125.01508 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.46896 * 24.98450 * 5 4 3 25 25 H 1.09001 * 109.47448 * 144.97637 * 5 4 3 26 26 H 0.96997 * 120.00234 * 180.02562 * 9 8 6 27 27 H 1.08008 * 119.81068 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.67401 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2499 1.1199 0.0000 4 6 3.5471 0.7709 -0.0006 5 6 4.7276 1.7076 -0.0002 6 6 5.1981 1.9235 -1.4155 7 1 4.6930 1.4313 -2.2335 8 6 6.2740 2.7486 -1.6661 9 7 6.8894 3.3475 -0.6700 10 14 6.8575 3.0156 -3.4203 11 1 6.0036 2.2341 -4.3505 12 1 6.7663 4.4588 -3.7581 13 1 8.2671 2.5658 -3.5470 14 6 3.5959 -0.6918 -0.0016 15 7 4.5823 -1.5833 -0.0020 16 6 4.2975 -2.8713 -0.0025 17 6 2.9773 -3.2980 -0.0020 18 7 1.9881 -2.4245 -0.0017 19 6 2.2535 -1.1251 -0.0014 20 1 -0.3634 -0.0007 1.0277 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3634 -0.8896 -0.5145 23 1 1.8812 2.1350 0.0004 24 1 4.4334 2.6628 0.4346 25 1 5.5355 1.2738 0.5891 26 1 7.6460 3.9282 -0.8463 27 1 5.0966 -3.5979 -0.0032 28 1 2.7571 -4.3553 -0.0019 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254725.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:30 Heat of formation + Delta-G solvation = 60.219833 kcal Electronic energy + Delta-G solvation = -13821.357941 eV Core-core repulsion = 11451.250206 eV Total energy + Delta-G solvation = -2370.107735 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.79385 -39.55236 -35.96121 -34.91354 -33.31873 -31.20202 -29.76257 -27.15414 -25.28665 -24.95228 -23.42460 -20.53288 -18.71822 -18.42564 -18.21489 -16.94937 -16.77465 -16.38794 -15.63345 -14.77797 -14.62161 -14.41013 -14.18633 -13.95893 -13.30473 -12.99551 -12.72622 -12.56404 -12.48744 -12.37364 -12.35326 -11.77905 -11.43582 -10.56719 -9.78035 -9.45533 -8.90643 -8.12950 -6.26314 -0.05191 0.24019 1.38352 1.40257 1.52349 1.57346 1.73324 2.44089 2.96188 3.14926 3.31289 3.34637 3.54192 4.00909 4.17964 4.32011 4.46216 4.49150 4.69380 4.71187 4.81491 5.21713 5.37761 5.46115 5.70747 5.79127 6.01656 6.11647 6.27074 6.57479 6.84010 7.04548 7.40718 8.94742 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.008627 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.060618 B = 3244.986863 C = 3674.066300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.466 5.466 3 C 0.069 3.931 4 C -0.147 4.147 5 C 0.098 3.902 6 C -0.517 4.517 7 H 0.043 0.957 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.270 1.270 13 H -0.279 1.279 14 C 0.017 3.983 15 N -0.442 5.442 16 C 0.021 3.979 17 C 0.086 3.914 18 N -0.464 5.464 19 C 0.215 3.785 20 H 0.084 0.916 21 H 0.111 0.889 22 H 0.085 0.915 23 H 0.212 0.788 24 H 0.017 0.983 25 H -0.009 1.009 26 H 0.265 0.735 27 H 0.203 0.797 28 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.664 -9.750 0.896 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.153 5.153 3 C -0.057 4.057 4 C -0.154 4.154 5 C 0.061 3.939 6 C -0.555 4.555 7 H 0.062 0.938 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.196 1.196 12 H -0.195 1.195 13 H -0.205 1.205 14 C -0.119 4.119 15 N -0.156 5.156 16 C -0.148 4.148 17 C -0.083 4.083 18 N -0.184 5.184 19 C -0.021 4.021 20 H 0.103 0.897 21 H 0.129 0.871 22 H 0.104 0.896 23 H 0.228 0.772 24 H 0.035 0.965 25 H 0.009 0.991 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.949 -9.439 0.937 16.051 hybrid contribution 0.811 0.273 -0.660 1.081 sum -12.138 -9.166 0.277 15.213 Atomic orbital electron populations 1.22273 0.73646 1.05713 1.04482 1.43737 1.07654 1.01871 1.61996 1.22071 0.88393 0.91966 1.03267 1.20866 0.96071 0.90446 1.08043 1.17333 0.89339 0.91457 0.95821 1.21332 1.14411 1.26916 0.92886 0.93845 1.25853 0.96401 0.95494 1.01486 1.70077 1.22493 1.31618 1.32895 0.85438 0.78014 0.78226 0.79572 1.19566 1.19492 1.20502 1.20924 0.89720 0.95346 1.05936 1.67792 1.36487 1.03379 1.07930 1.24283 0.99009 0.91865 0.99689 1.24258 0.88280 1.00959 0.94809 1.67281 1.37714 0.98767 1.14619 1.19294 0.89708 0.88958 1.04176 0.89705 0.87068 0.89598 0.77163 0.96492 0.99090 0.92642 0.78023 0.76076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.57 11.08 127.77 1.42 2.98 15 2 N -0.47 -15.13 3.17 -544.97 -1.73 -16.86 15 3 C 0.07 2.53 11.20 83.03 0.93 3.46 15 4 C -0.15 -6.98 5.51 -18.65 -0.10 -7.09 15 5 C 0.10 5.55 5.51 29.10 0.16 5.71 15 6 C -0.52 -31.07 9.09 25.60 0.23 -30.84 15 7 H 0.04 2.63 7.74 -2.91 -0.02 2.60 15 8 C 0.01 0.31 5.46 84.66 0.46 0.78 15 9 N -0.93 -57.64 13.29 21.45 0.28 -57.36 15 10 Si 0.96 46.03 29.54 68.60 2.03 48.06 15 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 15 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 14 C 0.02 0.79 7.49 41.78 0.31 1.10 15 15 N -0.44 -19.60 10.55 -184.65 -1.95 -21.55 15 16 C 0.02 0.66 11.21 84.80 0.95 1.61 15 17 C 0.09 2.27 11.19 84.79 0.95 3.21 15 18 N -0.46 -15.17 10.52 -192.25 -2.02 -17.19 15 19 C 0.21 8.18 7.90 134.02 1.06 9.24 15 20 H 0.08 1.41 8.14 -2.38 -0.02 1.39 15 21 H 0.11 1.60 8.13 -2.39 -0.02 1.58 15 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.21 6.01 8.06 -2.91 -0.02 5.99 15 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 15 26 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15 27 H 0.20 4.35 8.06 -2.91 -0.02 4.33 15 28 H 0.22 3.15 8.06 -2.91 -0.02 3.13 15 Total: -1.00 -79.23 254.93 4.15 -75.09 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 1.16 Total: -0.35 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 6.37 Total: -9.84 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -5.41 Total: -112.96 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.23 4.15 -75.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254725.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.309 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds