Wall clock time and date at job start Mon Mar 30 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40279 * 126.75645 * 2 1 4 4 N 1.28643 * 109.43012 * 179.97438 * 3 2 1 5 5 C 1.34788 * 110.32058 * 0.02562 * 4 3 2 6 6 C 1.40133 * 133.16462 * 180.02562 * 5 4 3 7 7 C 1.36415 * 119.80021 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.62238 * 179.72179 * 7 6 5 9 9 C 1.50704 * 109.47321 * 90.00258 * 8 7 6 10 10 H 1.08000 * 119.99677 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00159 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99876 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99948 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47624 * 59.99225 * 13 11 9 15 15 H 1.48506 * 109.46912 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46914 * 299.99247 * 13 11 9 17 17 C 1.38900 * 120.75183 * 359.97438 * 7 6 5 18 18 C 1.36668 * 120.58251 * 359.97438 * 17 7 6 19 19 C 1.37462 * 126.75941 * 180.02562 * 2 1 3 20 20 H 1.09000 * 109.47123 * 90.01947 * 1 2 3 21 21 H 1.08996 * 109.46680 * 210.01799 * 1 2 3 22 22 H 1.08999 * 109.47182 * 330.01743 * 1 2 3 23 23 H 1.08001 * 120.09963 * 359.95314 * 6 5 4 24 24 H 1.09004 * 109.47157 * 209.99534 * 8 7 6 25 25 H 1.09001 * 109.47604 * 329.99676 * 8 7 6 26 26 H 0.97001 * 119.99827 * 180.02562 * 12 11 9 27 27 H 1.08006 * 119.70891 * 180.02562 * 17 7 6 28 28 H 1.08001 * 120.09623 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3045 1.1239 0.0000 4 7 3.5325 0.7408 0.0005 5 6 3.6029 -0.6053 0.0004 6 6 4.6737 -1.5092 0.0012 7 6 4.4282 -2.8511 0.0013 8 6 5.5827 -3.8196 -0.0042 9 6 5.9734 -4.1435 1.4148 10 1 5.4394 -3.6928 2.2382 11 6 7.0133 -5.0145 1.6618 12 7 7.6639 -5.5630 0.6591 13 14 7.4971 -5.4166 3.4207 14 1 6.3416 -6.0286 4.1244 15 1 8.6349 -6.3709 3.4153 16 1 7.8993 -4.1701 4.1207 17 6 3.1261 -3.3348 0.0010 18 6 2.0645 -2.4741 0.0013 19 6 2.2877 -1.1013 -0.0005 20 1 -0.3633 -0.0003 -1.0277 21 1 -0.3632 -0.8898 0.5141 22 1 -0.3633 0.8901 0.5136 23 1 5.6903 -1.1446 0.0015 24 1 5.2869 -4.7346 -0.5174 25 1 6.4310 -3.3710 -0.5213 26 1 8.3953 -6.1760 0.8329 27 1 2.9511 -4.4006 0.0015 28 1 1.0554 -2.8588 0.0007 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254865.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:29 Heat of formation + Delta-G solvation = 102.043372 kcal Electronic energy + Delta-G solvation = -13601.125613 eV Core-core repulsion = 11232.831483 eV Total energy + Delta-G solvation = -2368.294130 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65430 -37.52764 -34.44039 -33.22952 -30.96731 -30.05367 -27.71099 -26.71521 -23.74368 -22.94058 -20.80511 -20.79202 -17.05683 -16.82805 -16.33305 -15.80109 -15.00347 -14.51492 -13.81866 -13.51173 -13.45405 -12.99149 -12.45911 -12.07883 -11.83754 -11.42748 -11.22314 -11.21267 -10.70870 -10.61934 -10.35250 -10.27612 -9.66515 -9.45221 -8.45708 -8.30068 -7.65181 -6.07795 -4.12177 0.88318 1.88593 2.34947 2.62894 3.30837 3.35294 3.38492 4.18354 4.44402 4.49787 4.53667 4.99354 5.03734 5.22235 5.27117 5.30689 5.54762 5.64790 5.87619 6.23482 6.33628 6.46385 6.83883 6.86742 6.99103 7.29717 7.49914 7.70876 7.87543 8.25615 8.36449 8.92632 9.52226 11.01843 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.050556 B = 0.006586 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.703695 B = 4250.341283 C = 4321.043638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.408 5.408 3 N -0.033 5.033 4 N -0.224 5.224 5 C -0.012 4.012 6 C -0.051 4.051 7 C -0.051 4.051 8 C 0.051 3.949 9 C -0.516 4.516 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.049 4.049 18 C -0.139 4.139 19 C 0.071 3.929 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.135 0.865 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.136 0.864 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 5.505 -1.756 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.204 5.204 3 N -0.012 5.012 4 N -0.102 5.102 5 C -0.136 4.136 6 C -0.073 4.073 7 C -0.054 4.054 8 C 0.014 3.986 9 C -0.554 4.554 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.071 4.071 18 C -0.161 4.161 19 C -0.049 4.049 20 H 0.093 0.907 21 H 0.105 0.895 22 H 0.109 0.891 23 H 0.152 0.848 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.154 0.846 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.925 6.953 -1.800 14.787 hybrid contribution -0.015 -1.286 1.008 1.634 sum -12.940 5.667 -0.792 14.149 Atomic orbital electron populations 1.21824 0.73805 1.04561 1.03385 1.49936 1.07161 1.03852 1.59482 1.81493 0.94179 1.07910 1.17666 1.74468 1.11172 1.11497 1.13052 1.19862 0.93587 0.89607 1.10566 1.20136 0.97148 0.91089 0.98928 1.20302 0.96392 0.94247 0.94504 1.18358 0.89890 0.92382 0.97934 1.21025 1.16316 1.26663 0.91417 0.92441 1.24993 0.96111 0.95834 0.97232 1.69937 1.22124 1.30397 1.30690 0.86597 0.78064 0.78293 0.84744 1.20184 1.21226 1.20112 1.20962 0.91606 0.99912 0.94640 1.19716 0.99881 0.88247 1.08253 1.19312 0.90860 0.90389 1.04351 0.90652 0.89463 0.89100 0.84761 0.94911 0.94900 0.92705 0.84641 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.96 11.54 59.85 0.69 1.65 15 2 N -0.41 -6.19 4.12 -65.49 -0.27 -6.46 15 3 N -0.03 -0.59 13.73 60.35 0.83 0.24 15 4 N -0.22 -4.40 12.36 32.07 0.40 -4.00 15 5 C -0.01 -0.23 7.26 -84.98 -0.62 -0.85 15 6 C -0.05 -1.02 9.67 -39.53 -0.38 -1.41 15 7 C -0.05 -1.05 5.03 -105.03 -0.53 -1.58 15 8 C 0.05 1.24 5.08 -29.03 -0.15 1.10 15 9 C -0.52 -13.88 9.09 -34.44 -0.31 -14.19 15 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 12 N -0.89 -25.61 13.29 55.43 0.74 -24.87 15 13 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 17 C -0.05 -0.86 9.61 -39.90 -0.38 -1.24 15 18 C -0.14 -2.12 10.01 -39.84 -0.40 -2.52 15 19 C 0.07 1.21 6.94 -84.15 -0.58 0.62 15 20 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.09 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.13 2.66 8.06 -52.49 -0.42 2.24 15 24 H 0.03 0.82 8.08 -51.93 -0.42 0.40 15 25 H 0.03 0.84 8.07 -51.93 -0.42 0.42 15 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 27 H 0.14 2.13 8.06 -52.48 -0.42 1.71 15 28 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 LS Contribution 254.84 15.07 3.84 3.84 Total: -1.00 -30.92 254.84 -5.17 -36.08 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -2.92 Total: -4.01 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.76 Total: -16.87 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 1.69 Total: -35.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.92 -5.17 -36.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254865.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.125 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds