Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31222 * 119.81304 * 2 1 4 4 C 1.34084 * 120.92285 * 179.76672 * 3 2 1 5 5 N 1.32524 * 131.94969 * 180.14660 * 4 3 2 6 6 C 1.33636 * 109.25736 * 180.28606 * 5 4 3 7 7 C 1.35001 * 108.62617 * 359.97438 * 6 5 4 8 8 N 1.36838 * 107.09536 * 359.97438 * 7 6 5 9 9 C 1.36457 * 132.72818 * 179.97438 * 8 7 6 10 10 C 1.35581 * 119.07417 * 180.02562 * 9 8 7 11 11 C 1.50697 * 120.33727 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47029 * 264.99325 * 11 10 9 13 13 H 1.07998 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00129 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00441 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00012 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47281 * 90.00020 * 16 14 12 18 18 H 1.48506 * 109.47236 * 209.99931 * 16 14 12 19 19 H 1.48499 * 109.47026 * 329.99834 * 16 14 12 20 20 H 1.08993 * 109.47608 * 269.77421 * 1 2 3 21 21 H 1.09000 * 109.47383 * 29.77829 * 1 2 3 22 22 H 1.09005 * 109.46865 * 149.77362 * 1 2 3 23 23 H 1.07995 * 125.68289 * 180.02562 * 6 5 4 24 24 H 1.08002 * 126.44976 * 180.02562 * 7 6 5 25 25 H 1.07993 * 120.46476 * 0.02562 * 9 8 7 26 26 H 1.08994 * 109.47552 * 25.00095 * 11 10 9 27 27 H 1.09005 * 109.46685 * 144.99996 * 11 10 9 28 28 H 0.96995 * 120.00213 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1593 1.1386 0.0000 4 6 3.4999 1.1645 0.0047 5 7 4.3666 2.1671 0.0082 6 6 5.6092 1.6756 0.0060 7 6 5.5396 0.3274 0.0015 8 7 4.2127 -0.0069 0.0015 9 6 3.5597 -1.2051 -0.0024 10 6 2.2040 -1.2166 -0.0016 11 6 1.4538 -2.5236 -0.0065 12 6 1.0954 -2.8918 -1.4231 13 1 1.3824 -2.2443 -2.2385 14 6 0.4019 -4.0557 -1.6785 15 7 0.0895 -4.3773 -2.9149 16 14 -0.0940 -5.1760 -0.2684 17 1 -1.4353 -4.7796 0.2307 18 1 -0.1389 -6.5817 -0.7452 19 1 0.8980 -5.0574 0.8303 20 1 -0.3634 -0.0040 1.0276 21 1 -0.3634 0.8920 -0.5104 22 1 -0.3633 -0.8880 -0.5174 23 1 6.5177 2.2596 0.0083 24 1 6.3741 -0.3582 -0.0008 25 1 4.1151 -2.1313 -0.0061 26 1 2.0810 -3.3041 0.4243 27 1 0.5432 -2.4220 0.5840 28 1 -0.3981 -5.1964 -3.0946 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259496.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = 95.965997 kcal Electronic energy + Delta-G solvation = -13938.359402 eV Core-core repulsion = 11569.801736 eV Total energy + Delta-G solvation = -2368.557665 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.57485 -38.38381 -34.37448 -33.69902 -31.87743 -30.12764 -27.75340 -27.35849 -23.78260 -22.49522 -21.31912 -20.91936 -18.16518 -17.05688 -16.54564 -15.85263 -15.11757 -14.47344 -13.96254 -13.72267 -13.38567 -13.13060 -12.73755 -12.38258 -12.05643 -11.61681 -11.41214 -11.14651 -10.77216 -10.71169 -10.23701 -10.07184 -9.64683 -9.33092 -8.78483 -8.33890 -7.73072 -6.26966 -4.30101 1.00006 1.50782 2.83000 3.08724 3.14605 3.23275 3.24491 3.91907 3.98904 4.22767 4.77163 4.83512 5.03105 5.04721 5.40251 5.52200 5.70247 5.92939 5.97841 6.01096 6.21501 6.48261 6.57643 6.74131 6.85233 6.93258 7.02053 7.40964 7.94020 8.24662 8.33278 8.75864 9.30642 10.85204 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046040 B = 0.008097 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.023796 B = 3457.048785 C = 3699.100358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.217 3.783 3 N -0.458 5.458 4 C 0.379 3.621 5 N -0.491 5.491 6 C 0.035 3.965 7 C -0.111 4.111 8 N -0.392 5.392 9 C 0.078 3.922 10 C -0.106 4.106 11 C 0.030 3.970 12 C -0.525 4.525 13 H 0.074 0.926 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.876 3.124 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.264 1.264 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.110 0.890 23 H 0.181 0.819 24 H 0.179 0.821 25 H 0.172 0.828 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 3.660 7.337 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.051 3.949 3 N -0.172 5.172 4 C 0.030 3.970 5 N -0.215 5.215 6 C -0.118 4.118 7 C -0.243 4.243 8 N -0.067 5.067 9 C -0.052 4.052 10 C -0.111 4.111 11 C -0.009 4.009 12 C -0.563 4.563 13 H 0.092 0.908 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.189 1.189 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.128 0.872 23 H 0.198 0.802 24 H 0.196 0.804 25 H 0.189 0.811 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.224 5.259 7.213 10.343 hybrid contribution 0.601 -2.349 0.473 2.470 sum 5.825 2.910 7.687 10.074 Atomic orbital electron populations 1.20934 0.86850 1.05595 1.03383 1.21841 0.97900 0.86463 0.88725 1.67729 1.02428 1.29124 1.17904 1.21953 0.89456 0.80933 1.04670 1.70635 0.99044 1.26877 1.24908 1.22438 0.95500 0.91425 1.02409 1.22483 0.84283 0.98221 1.19349 1.43933 1.08630 1.08589 1.45577 1.22001 0.93338 0.88161 1.01697 1.20768 0.92029 0.99162 0.99105 1.18715 0.95119 0.87644 0.99386 1.20813 1.37385 1.07733 0.90338 0.90752 1.24959 0.94964 0.97273 0.95530 1.69882 1.39097 1.24903 1.18934 0.86847 0.79722 0.80397 0.82829 1.19764 1.21090 1.18886 0.90020 0.90357 0.87181 0.80202 0.80358 0.81120 0.94830 0.94268 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.43 36.00 0.34 -1.44 15 2 C 0.22 4.15 6.83 -82.11 -0.56 3.59 15 3 N -0.46 -9.47 10.40 -9.92 -0.10 -9.57 15 4 C 0.38 7.78 8.92 -322.53 -2.88 4.91 15 5 N -0.49 -9.69 11.31 -14.46 -0.16 -9.85 15 6 C 0.04 0.54 11.83 -17.92 -0.21 0.33 15 7 C -0.11 -1.64 11.77 -16.47 -0.19 -1.84 15 8 N -0.39 -7.09 2.95 -64.40 -0.19 -7.28 15 9 C 0.08 1.39 10.70 -16.44 -0.18 1.21 15 10 C -0.11 -2.03 5.05 -104.83 -0.53 -2.56 15 11 C 0.03 0.61 3.50 -29.04 -0.10 0.51 15 12 C -0.53 -13.19 8.92 -34.44 -0.31 -13.50 15 13 H 0.07 2.11 7.98 -52.49 -0.42 1.69 15 14 C 0.08 1.98 5.47 -17.82 -0.10 1.89 15 15 N -0.89 -25.25 13.96 55.43 0.77 -24.48 15 16 Si 0.88 19.14 27.47 -169.99 -4.67 14.47 15 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 19 H -0.26 -5.44 6.54 56.52 0.37 -5.07 15 20 H 0.08 1.11 8.14 -51.93 -0.42 0.68 15 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.11 1.93 6.25 -51.93 -0.32 1.60 15 23 H 0.18 1.95 8.06 -52.49 -0.42 1.52 15 24 H 0.18 1.89 8.06 -52.49 -0.42 1.47 15 25 H 0.17 2.53 8.06 -52.49 -0.42 2.11 15 26 H 0.03 0.67 7.11 -51.93 -0.37 0.30 15 27 H 0.04 0.76 6.49 -51.93 -0.34 0.42 15 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 245.83 15.07 3.70 3.70 Total: -1.00 -30.95 245.83 -8.09 -39.04 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -2.73 Total: 0.89 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -4.72 Total: -6.91 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.32 Total: -51.19 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.67 Total: 14.47 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.95 -8.09 -39.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259496.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.005 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds