Wall clock time and date at job start Mon Mar 30 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31222 * 119.81304 * 2 1 4 4 C 1.34084 * 120.92285 * 179.76672 * 3 2 1 5 5 N 1.32524 * 131.94969 * 180.14660 * 4 3 2 6 6 C 1.33636 * 109.25736 * 180.28606 * 5 4 3 7 7 C 1.35001 * 108.62617 * 359.97438 * 6 5 4 8 8 N 1.36838 * 107.09536 * 359.97438 * 7 6 5 9 9 C 1.36457 * 132.72818 * 179.97438 * 8 7 6 10 10 C 1.35581 * 119.07417 * 180.02562 * 9 8 7 11 11 C 1.50697 * 120.33727 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47029 * 264.99325 * 11 10 9 13 13 H 1.07998 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00129 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00441 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00012 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47281 * 90.00020 * 16 14 12 18 18 H 1.48506 * 109.47236 * 209.99931 * 16 14 12 19 19 H 1.48499 * 109.47026 * 329.99834 * 16 14 12 20 20 H 1.08993 * 109.47608 * 269.77421 * 1 2 3 21 21 H 1.09000 * 109.47383 * 29.77829 * 1 2 3 22 22 H 1.09005 * 109.46865 * 149.77362 * 1 2 3 23 23 H 1.07995 * 125.68289 * 180.02562 * 6 5 4 24 24 H 1.08002 * 126.44976 * 180.02562 * 7 6 5 25 25 H 1.07993 * 120.46476 * 0.02562 * 9 8 7 26 26 H 1.08994 * 109.47552 * 25.00095 * 11 10 9 27 27 H 1.09005 * 109.46685 * 144.99996 * 11 10 9 28 28 H 0.96995 * 120.00213 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1593 1.1386 0.0000 4 6 3.4999 1.1645 0.0047 5 7 4.3666 2.1671 0.0082 6 6 5.6092 1.6756 0.0060 7 6 5.5396 0.3274 0.0015 8 7 4.2127 -0.0069 0.0015 9 6 3.5597 -1.2051 -0.0024 10 6 2.2040 -1.2166 -0.0016 11 6 1.4538 -2.5236 -0.0065 12 6 1.0954 -2.8918 -1.4231 13 1 1.3824 -2.2443 -2.2385 14 6 0.4019 -4.0557 -1.6785 15 7 0.0895 -4.3773 -2.9149 16 14 -0.0940 -5.1760 -0.2684 17 1 -1.4353 -4.7796 0.2307 18 1 -0.1389 -6.5817 -0.7452 19 1 0.8980 -5.0574 0.8303 20 1 -0.3634 -0.0040 1.0276 21 1 -0.3634 0.8920 -0.5104 22 1 -0.3633 -0.8880 -0.5174 23 1 6.5177 2.2596 0.0083 24 1 6.3741 -0.3582 -0.0008 25 1 4.1151 -2.1313 -0.0061 26 1 2.0810 -3.3041 0.4243 27 1 0.5432 -2.4220 0.5840 28 1 -0.3981 -5.1964 -3.0946 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259496.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:29 Heat of formation + Delta-G solvation = 78.400317 kcal Electronic energy + Delta-G solvation = -13939.121107 eV Core-core repulsion = 11569.801736 eV Total energy + Delta-G solvation = -2369.319370 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.91225 -39.76604 -35.84872 -35.34011 -33.59523 -31.48687 -29.40276 -28.64737 -25.37710 -23.94779 -22.72399 -22.32423 -19.54286 -18.97312 -17.94862 -17.25429 -16.48059 -16.19655 -15.33184 -14.97016 -14.79705 -14.57673 -14.25172 -14.00831 -13.58061 -13.03556 -12.90276 -12.57209 -12.33770 -12.31491 -11.86100 -11.60295 -11.44292 -10.78340 -10.71677 -9.76814 -9.03943 -8.25480 -6.33068 -0.37428 0.12615 1.45936 1.47507 1.52326 1.57709 1.85163 2.40218 2.54066 2.62126 3.09680 3.45810 3.52249 3.79436 4.10634 4.38041 4.45488 4.56540 4.67299 4.76334 4.87069 5.04727 5.15074 5.31991 5.38827 5.54244 5.63193 5.70657 6.25375 6.58132 6.73600 6.97764 7.31306 8.90676 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046040 B = 0.008097 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.023796 B = 3457.048785 C = 3699.100358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.205 3.795 3 N -0.485 5.485 4 C 0.340 3.660 5 N -0.523 5.523 6 C 0.029 3.971 7 C -0.095 4.095 8 N -0.399 5.399 9 C 0.089 3.911 10 C -0.131 4.131 11 C 0.039 3.961 12 C -0.519 4.519 13 H 0.024 0.976 14 C 0.016 3.984 15 N -0.948 5.948 16 Si 0.945 3.055 17 H -0.262 1.262 18 H -0.293 1.293 19 H -0.235 1.235 20 H 0.110 0.890 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.223 0.777 24 H 0.226 0.774 25 H 0.202 0.798 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 2.996 9.436 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.039 3.961 3 N -0.200 5.200 4 C -0.008 4.008 5 N -0.248 5.248 6 C -0.122 4.122 7 C -0.226 4.226 8 N -0.076 5.076 9 C -0.041 4.041 10 C -0.136 4.136 11 C 0.001 3.999 12 C -0.556 4.556 13 H 0.043 0.957 14 C -0.182 4.182 15 N -0.588 5.588 16 Si 0.768 3.232 17 H -0.187 1.187 18 H -0.219 1.219 19 H -0.158 1.158 20 H 0.128 0.872 21 H 0.101 0.899 22 H 0.111 0.889 23 H 0.239 0.761 24 H 0.243 0.757 25 H 0.219 0.781 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.755 4.621 9.333 12.413 hybrid contribution 0.299 -2.016 -0.251 2.053 sum 7.053 2.605 9.082 11.790 Atomic orbital electron populations 1.20940 0.85493 1.04864 1.04982 1.22180 0.98963 0.86348 0.88595 1.67684 1.03252 1.29877 1.19168 1.22156 0.89841 0.82114 1.06724 1.70602 1.00799 1.27807 1.25560 1.23260 0.95359 0.92322 1.01281 1.23387 0.83935 0.98996 1.16328 1.44122 1.09712 1.08082 1.45663 1.22421 0.93269 0.89040 0.99405 1.20689 0.92966 0.98539 1.01387 1.18559 0.96296 0.88719 0.96374 1.20969 1.36399 1.06586 0.91688 0.95724 1.25893 0.95024 0.99131 0.98158 1.70057 1.41064 1.25858 1.21823 0.85735 0.80363 0.77256 0.79823 1.18725 1.21896 1.15790 0.87158 0.89946 0.88871 0.76070 0.75746 0.78075 0.93124 0.92623 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.40 9.43 71.23 0.67 -2.72 15 2 C 0.20 7.82 6.83 43.13 0.29 8.12 15 3 N -0.49 -20.24 10.40 -185.31 -1.93 -22.16 15 4 C 0.34 13.81 8.92 261.39 2.33 16.14 15 5 N -0.52 -20.12 11.31 -199.65 -2.26 -22.38 15 6 C 0.03 0.81 11.83 83.67 0.99 1.80 15 7 C -0.10 -2.48 11.77 83.17 0.98 -1.50 15 8 N -0.40 -13.67 2.95 -357.67 -1.05 -14.72 15 9 C 0.09 2.96 10.70 83.36 0.89 3.85 15 10 C -0.13 -4.90 5.05 -20.00 -0.10 -5.00 15 11 C 0.04 1.53 3.50 29.10 0.10 1.63 15 12 C -0.52 -26.31 8.92 25.60 0.23 -26.09 15 13 H 0.02 1.45 7.98 -2.91 -0.02 1.43 15 14 C 0.02 0.82 5.47 84.65 0.46 1.29 15 15 N -0.95 -55.29 13.96 21.45 0.30 -54.99 15 16 Si 0.95 38.42 27.47 68.60 1.88 40.31 15 17 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 18 H -0.29 -12.19 7.11 99.48 0.71 -11.48 15 19 H -0.24 -8.38 6.54 99.48 0.65 -7.73 15 20 H 0.11 2.83 8.14 -2.39 -0.02 2.81 15 21 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 22 H 0.09 3.30 6.25 -2.38 -0.01 3.28 15 23 H 0.22 3.89 8.06 -2.91 -0.02 3.87 15 24 H 0.23 3.52 8.06 -2.91 -0.02 3.49 15 25 H 0.20 5.25 8.06 -2.91 -0.02 5.23 15 26 H 0.05 1.83 7.11 -2.39 -0.02 1.81 15 27 H 0.06 2.01 6.49 -2.38 -0.02 2.00 15 28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 15 Total: -1.00 -69.81 245.83 4.91 -64.90 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.11 Total: 11.54 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 6.85 Total: -2.49 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.94 Total: -114.25 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.88 Total: 40.31 kcal Total: -69.81 4.91 -64.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259496.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.297 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds