Wall clock time and date at job start Mon Mar 30 2020 03:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99779 * 2 1 4 4 H 1.48500 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47348 * 299.99608 * 3 2 1 6 6 H 1.48495 * 109.47459 * 60.00113 * 3 2 1 7 7 C 1.37874 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00352 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47505 * 180.02562 * 9 7 2 11 11 C 1.38270 * 120.08216 * 270.26800 * 10 9 7 12 12 C 1.38016 * 119.86809 * 180.33439 * 11 10 9 13 13 C 1.38735 * 120.37323 * 359.49641 * 12 11 10 14 14 C 1.37826 * 119.72874 * 0.04972 * 13 12 11 15 15 C 1.38027 * 120.08893 * 89.99295 * 10 9 7 16 16 C 1.50717 * 121.66049 * 180.52774 * 14 13 12 17 17 C 1.52905 * 109.94437 * 342.80617 * 16 14 13 18 18 N 1.47157 * 108.50708 * 50.47318 * 17 16 14 19 19 C 1.46619 * 110.28056 * 288.79192 * 18 17 16 20 20 H 0.96999 * 120.00186 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47730 * 59.99437 * 9 7 2 22 22 H 1.09003 * 109.46916 * 299.99857 * 9 7 2 23 23 H 1.07998 * 120.06383 * 0.08017 * 11 10 9 24 24 H 1.08002 * 119.81434 * 179.78436 * 12 11 10 25 25 H 1.07993 * 119.83126 * 359.97438 * 15 10 9 26 26 H 1.08997 * 109.39525 * 102.95029 * 16 14 13 27 27 H 1.08997 * 109.39151 * 222.76478 * 16 14 13 28 28 H 1.09001 * 109.62341 * 170.17891 * 17 16 14 29 29 H 1.08997 * 109.62876 * 290.76532 * 17 16 14 30 30 H 1.00905 * 110.99090 * 165.35327 * 18 17 16 31 31 H 1.09001 * 109.26645 * 292.25786 * 19 18 17 32 32 H 1.09000 * 109.27436 * 172.78838 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0018 11 6 2.6858 -4.1683 -1.1941 12 6 3.5773 -5.2219 -1.1878 13 6 4.0277 -5.7526 0.0123 14 6 3.5805 -5.2240 1.2040 15 6 2.6791 -4.1700 1.1967 16 6 4.0501 -5.7589 2.5325 17 6 4.6779 -7.1406 2.3459 18 7 5.6693 -7.0605 1.2613 19 6 4.9962 -6.9053 -0.0320 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.3416 -3.7564 -2.1312 24 1 3.9299 -5.6326 -2.1224 25 1 2.3271 -3.7578 2.1307 26 1 4.7900 -5.0793 2.9553 27 1 3.2011 -5.8376 3.2115 28 1 5.1693 -7.4471 3.2694 29 1 3.9043 -7.8618 2.0825 30 1 6.2709 -7.8706 1.2610 31 1 4.4546 -7.8214 -0.2678 32 1 5.7414 -6.7196 -0.8054 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261264584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:20 Heat of formation + Delta-G solvation = -12.103160 kcal Electronic energy + Delta-G solvation = -13952.246363 eV Core-core repulsion = 11682.542811 eV Total energy + Delta-G solvation = -2269.703552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86144 -37.73229 -35.27921 -33.55751 -32.84572 -30.13326 -29.09787 -25.91449 -24.42147 -23.42536 -22.80872 -19.97675 -18.54786 -17.62902 -16.84877 -16.53072 -15.91941 -15.56319 -15.30687 -15.12872 -14.53896 -14.07036 -13.93686 -13.44320 -13.34709 -13.07376 -12.86917 -12.68854 -12.45291 -12.21540 -12.07587 -11.55234 -11.42773 -11.20274 -10.64058 -9.65282 -9.41902 -9.09784 -8.23018 -6.37209 0.57353 0.59045 1.37311 1.37448 1.51724 2.37338 2.94276 3.06878 3.34207 3.83728 3.88217 4.13067 4.23350 4.38619 4.45788 4.52797 4.57097 4.66756 4.77793 4.91417 4.95780 5.08080 5.15090 5.22055 5.33718 5.42095 5.61591 5.70885 5.75847 6.00598 6.07862 6.11035 6.27327 6.60944 6.75304 7.31577 8.86290 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.046221 B = 0.006577 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.634920 B = 4256.526181 C = 4376.504884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.057 3.943 10 C -0.066 4.066 11 C -0.142 4.142 12 C -0.112 4.112 13 C -0.112 4.112 14 C -0.077 4.077 15 C -0.142 4.142 16 C -0.077 4.077 17 C 0.061 3.939 18 N -0.694 5.694 19 C 0.107 3.893 20 H 0.267 0.733 21 H 0.003 0.997 22 H 0.001 0.999 23 H 0.114 0.886 24 H 0.147 0.853 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.038 0.962 30 H 0.360 0.640 31 H 0.055 0.945 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -14.983 2.100 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.020 3.980 10 C -0.066 4.066 11 C -0.160 4.160 12 C -0.130 4.130 13 C -0.113 4.113 14 C -0.077 4.077 15 C -0.160 4.160 16 C -0.115 4.115 17 C -0.068 4.068 18 N -0.327 5.327 19 C -0.022 4.022 20 H 0.075 0.925 21 H 0.021 0.979 22 H 0.019 0.981 23 H 0.132 0.868 24 H 0.164 0.836 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.180 0.820 31 H 0.073 0.927 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.267 -14.216 2.188 17.672 hybrid contribution -0.692 0.527 -0.245 0.904 sum 9.574 -13.689 1.943 16.818 Atomic orbital electron populations 1.70088 1.07676 1.27985 1.51297 1.25948 0.95810 1.03173 0.94455 0.85362 0.78788 0.78548 0.78162 1.19128 1.19845 1.19921 1.21382 0.92940 0.91316 1.51036 0.93082 1.18088 0.92899 0.91331 0.95641 1.20359 0.97075 0.95128 0.94000 1.21050 0.99730 0.97939 0.97311 1.21210 0.97240 0.96066 0.98472 1.19794 0.99692 0.99506 0.92291 1.19812 0.95990 0.95605 0.96330 1.21031 0.99861 0.97868 0.97279 1.20597 1.00424 0.97567 0.92866 1.21973 0.94194 0.94956 0.95723 1.60501 1.21720 1.47502 1.02977 1.20695 0.94812 0.94064 0.92591 0.92461 0.97880 0.98101 0.86833 0.83553 0.87485 0.90532 0.89934 0.87972 0.94344 0.81973 0.92700 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.53 -31.56 9.09 25.60 0.23 -31.33 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.06 3.23 5.11 29.10 0.15 3.38 16 10 C -0.07 -3.11 5.07 -19.91 -0.10 -3.21 16 11 C -0.14 -5.88 9.71 22.22 0.22 -5.67 16 12 C -0.11 -3.70 9.65 22.34 0.22 -3.48 16 13 C -0.11 -3.54 5.79 -19.87 -0.12 -3.66 16 14 C -0.08 -2.68 5.77 -19.85 -0.11 -2.79 16 15 C -0.14 -6.03 9.31 22.33 0.21 -5.82 16 16 C -0.08 -2.05 5.95 29.82 0.18 -1.87 16 17 C 0.06 1.20 6.59 86.22 0.57 1.77 16 18 N -0.69 -13.97 6.87 -518.29 -3.56 -17.53 16 19 C 0.11 2.38 6.34 85.59 0.54 2.92 16 20 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 21 H 0.00 0.17 8.09 -2.39 -0.02 0.15 16 22 H 0.00 0.04 8.09 -2.39 -0.02 0.02 16 23 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 24 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 25 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 0.74 8.05 -2.39 -0.02 0.72 16 30 H 0.36 4.93 8.90 -89.69 -0.80 4.13 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.88 8.13 -2.39 -0.02 1.86 16 Total: -1.00 -68.72 268.89 1.49 -67.23 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.30 Total: 8.94 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 2.44 Total: -49.05 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -3.28 Total: -74.64 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.72 1.49 -67.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.129 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds