Wall clock time and date at job start Mon Mar 30 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32303 * 120.76788 * 2 1 4 4 C 1.32103 * 121.18024 * 179.97438 * 3 2 1 5 5 N 1.31598 * 122.62849 * 0.02562 * 4 3 2 6 6 C 1.32867 * 120.52206 * 359.97438 * 5 4 3 7 7 N 1.36803 * 134.41897 * 180.02562 * 6 5 4 8 8 H 0.97000 * 124.97191 * 359.96010 * 7 6 5 9 9 C 1.37046 * 110.05673 * 179.73897 * 7 6 5 10 10 C 1.34268 * 109.92821 * 0.40883 * 9 7 6 11 11 C 1.50700 * 126.58163 * 179.87264 * 10 9 7 12 12 C 1.50702 * 109.46869 * 264.68398 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.39344 * 120.76173 * 179.97438 * 2 1 3 21 21 H 1.09006 * 109.46739 * 270.02348 * 1 2 3 22 22 H 1.09005 * 109.46770 * 30.01373 * 1 2 3 23 23 H 1.08998 * 109.47650 * 150.02205 * 1 2 3 24 24 H 1.07999 * 118.68587 * 180.02562 * 4 3 2 25 25 H 1.08001 * 125.03276 * 180.27946 * 9 7 6 26 26 H 1.09004 * 109.47210 * 144.68691 * 11 10 9 27 27 H 1.08994 * 109.47551 * 24.68343 * 11 10 9 28 28 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1839 1.1368 0.0000 4 6 3.5048 1.1463 0.0005 5 7 4.2224 0.0432 0.0005 6 6 3.6308 -1.1466 0.0006 7 7 4.0795 -2.4389 0.0010 8 1 5.0127 -2.7035 0.0009 9 6 3.0174 -3.3051 0.0067 10 6 1.8650 -2.6162 0.0010 11 6 0.4732 -3.1941 0.0016 12 6 -0.0387 -3.2727 -1.4136 13 1 0.5819 -2.9381 -2.2318 14 6 -1.2970 -3.7776 -1.6646 15 7 -2.0525 -4.1854 -0.6684 16 14 -1.9284 -3.8821 -3.4195 17 1 -1.5562 -5.1964 -4.0020 18 1 -3.4066 -3.7400 -3.4229 19 1 -1.3246 -2.7932 -4.2286 20 6 2.2197 -1.1974 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8899 -0.5141 23 1 -0.3634 -0.8901 -0.5135 24 1 4.0164 2.0975 0.0009 25 1 3.0960 -4.3822 0.0125 26 1 -0.1850 -2.5558 0.5911 27 1 0.4949 -4.1934 0.4361 28 1 -2.9379 -4.5403 -0.8449 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:22 Heat of formation + Delta-G solvation = 50.074761 kcal Electronic energy + Delta-G solvation = -14020.155215 eV Core-core repulsion = 11649.607556 eV Total energy + Delta-G solvation = -2370.547658 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.78367 -39.58233 -35.99800 -34.81001 -32.68005 -31.73448 -29.54917 -28.18276 -25.03763 -24.47631 -23.65312 -20.19921 -19.59723 -18.37824 -17.79945 -16.81854 -16.46180 -16.41274 -15.71964 -14.53892 -14.44170 -14.30394 -13.98290 -13.80965 -13.39950 -13.37963 -12.88140 -12.69361 -12.47358 -11.77432 -11.66088 -11.45744 -11.15853 -10.50037 -10.15314 -9.93440 -8.83434 -8.09332 -6.21252 -0.13177 0.37099 1.43360 1.45344 1.54713 1.78409 1.80818 2.47736 2.93800 3.19906 3.27903 3.45506 3.71741 3.90799 4.22716 4.53510 4.66573 4.75467 4.77811 4.95496 5.23429 5.34546 5.50009 5.55456 5.75353 5.84908 5.99709 6.03474 6.30616 6.63165 6.89894 7.27720 7.46292 8.97227 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035384 B = 0.009241 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.126147 B = 3029.279513 C = 3383.730748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.224 3.776 3 N -0.561 5.561 4 C 0.302 3.698 5 N -0.549 5.549 6 C 0.298 3.702 7 N -0.557 5.557 8 H 0.434 0.566 9 C 0.044 3.956 10 C -0.126 4.126 11 C 0.090 3.910 12 C -0.515 4.515 13 H 0.045 0.955 14 C 0.016 3.984 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.226 4.226 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.234 0.766 25 H 0.209 0.791 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 4.496 1.286 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 N -0.279 5.279 4 C 0.013 3.987 5 N -0.271 5.271 6 C 0.056 3.944 7 N -0.166 5.166 8 H 0.275 0.725 9 C -0.080 4.080 10 C -0.133 4.133 11 C 0.052 3.948 12 C -0.553 4.553 13 H 0.064 0.936 14 C -0.183 4.183 15 N -0.564 5.564 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.236 4.236 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.103 0.897 24 H 0.250 0.750 25 H 0.226 0.774 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.952 5.152 1.322 11.284 hybrid contribution -0.506 -1.082 -0.796 1.435 sum 9.447 4.069 0.526 10.299 Atomic orbital electron populations 1.20907 0.87381 1.04653 1.03791 1.21521 0.97784 0.86526 0.86699 1.68321 1.10539 1.29104 1.19973 1.25307 0.86359 0.96167 0.90887 1.67360 1.41899 0.96440 1.21397 1.18693 0.89697 0.87339 0.98664 1.41348 1.10031 1.01239 1.63981 0.72483 1.22122 0.84151 0.96577 1.05123 1.20911 0.97140 0.89896 1.05373 1.17525 0.86729 0.94592 0.95935 1.21251 1.00060 1.41019 0.92947 0.93648 1.25669 0.97058 0.95137 1.00418 1.70044 1.10530 1.43284 1.32523 0.85686 0.77481 0.78550 0.80767 1.19964 1.20743 1.19792 1.20727 0.95047 0.96168 1.11670 0.89395 0.89470 0.89705 0.75024 0.77410 0.96711 0.96834 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.16 9.53 71.24 0.68 -3.48 15 2 C 0.22 8.90 6.86 42.76 0.29 9.19 15 3 N -0.56 -20.10 10.37 -187.45 -1.94 -22.04 15 4 C 0.30 9.40 12.24 180.85 2.21 11.62 15 5 N -0.55 -18.58 10.47 -197.64 -2.07 -20.65 15 6 C 0.30 10.80 8.49 134.17 1.14 11.94 15 7 N -0.56 -16.44 6.03 -192.20 -1.16 -17.60 15 8 H 0.43 9.20 8.96 -92.71 -0.83 8.37 15 9 C 0.04 1.43 11.74 82.97 0.97 2.41 15 10 C -0.13 -5.25 5.50 -18.69 -0.10 -5.35 15 11 C 0.09 4.41 4.63 29.10 0.13 4.54 15 12 C -0.51 -27.44 8.09 25.60 0.21 -27.23 15 13 H 0.05 2.46 7.74 -2.91 -0.02 2.44 15 14 C 0.02 0.86 5.46 84.66 0.46 1.32 15 15 N -0.92 -52.38 13.29 21.45 0.28 -52.10 15 16 Si 0.95 42.70 29.54 68.60 2.03 44.72 15 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 20 C -0.23 -9.27 6.18 -20.20 -0.12 -9.39 15 21 H 0.09 3.07 8.14 -2.38 -0.02 3.05 15 22 H 0.09 2.92 8.14 -2.38 -0.02 2.90 15 23 H 0.08 3.75 5.31 -2.39 -0.01 3.74 15 24 H 0.23 4.89 8.06 -2.91 -0.02 4.86 15 25 H 0.21 5.34 8.06 -2.91 -0.02 5.31 15 26 H 0.01 0.77 6.77 -2.38 -0.02 0.75 15 27 H 0.01 0.69 8.14 -2.39 -0.02 0.67 15 28 H 0.26 14.19 8.31 -92.70 -0.77 13.42 15 Total: -1.00 -64.39 247.38 3.38 -61.02 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.36 Total: 11.08 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.87 Total: -4.44 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -4.89 Total: -112.38 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -64.39 3.38 -61.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.093 kcal (2) G-P(sol) polarization free energy of solvation -64.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds