Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32140 * 118.68080 * 2 1 4 4 C 1.32280 * 121.17208 * 179.97438 * 3 2 1 5 5 C 1.39380 * 118.46879 * 0.03684 * 4 3 2 6 6 C 1.46256 * 135.18760 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.58894 * 0.02562 * 6 5 4 8 8 C 1.50701 * 109.47064 * 84.99684 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.34270 * 106.82709 * 180.26658 * 6 5 4 17 17 N 1.37041 * 109.91836 * 359.57138 * 16 6 5 18 18 H 0.97006 * 124.97021 * 180.14873 * 17 16 6 19 19 C 1.36797 * 110.05801 * 0.44668 * 17 16 6 20 20 N 1.31568 * 118.68867 * 180.02562 * 2 1 3 21 21 H 1.08994 * 109.47144 * 269.97794 * 1 2 3 22 22 H 1.08999 * 109.47233 * 29.98454 * 1 2 3 23 23 H 1.09004 * 109.46791 * 149.98279 * 1 2 3 24 24 H 1.08001 * 120.76242 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47152 * 324.99777 * 7 6 5 26 26 H 1.09001 * 109.46980 * 204.99877 * 7 6 5 27 27 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 28 28 H 1.07994 * 125.03938 * 179.74207 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1412 1.1593 0.0000 4 6 3.4627 1.2168 0.0005 5 6 4.1797 0.0216 0.0003 6 6 5.5974 -0.3379 0.0002 7 6 6.7656 0.6142 0.0009 8 6 7.0765 1.0268 1.4166 9 1 6.4875 0.6380 2.2341 10 6 8.1137 1.8997 1.6682 11 7 8.8313 2.3727 0.6728 12 14 8.4996 2.4104 3.4231 13 1 8.8402 1.2079 4.2252 14 1 9.6506 3.3488 3.4238 15 1 7.3144 3.0811 4.0155 16 6 5.6584 -1.6792 -0.0061 17 7 4.3924 -2.2041 -0.0003 18 1 4.1833 -3.1513 -0.0011 19 6 3.4669 -1.1968 -0.0001 20 7 2.1386 -1.1542 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3633 -0.8899 -0.5141 24 1 3.9743 2.1680 0.0009 25 1 6.5154 1.4967 -0.5881 26 1 7.6357 0.1221 -0.4337 27 1 9.5607 2.9871 0.8498 28 1 6.5698 -2.2585 -0.0118 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261275557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = 69.506867 kcal Electronic energy + Delta-G solvation = -13703.022880 eV Core-core repulsion = 11333.317861 eV Total energy + Delta-G solvation = -2369.705019 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36751 -38.34913 -33.86814 -32.89387 -31.40709 -30.93569 -27.75577 -26.44852 -23.83485 -23.08305 -21.67162 -18.94378 -18.19286 -16.34349 -16.26873 -15.70326 -15.12888 -14.52219 -13.89845 -13.43419 -13.03763 -12.66962 -12.40236 -12.21731 -12.06699 -11.82824 -11.39518 -10.87699 -10.70183 -10.31603 -10.15603 -9.74058 -9.42322 -8.74452 -8.46538 -8.42217 -7.34870 -6.04940 -4.09111 1.27630 1.77792 3.08015 3.24664 3.31466 3.36050 3.41081 4.30184 4.44763 4.45771 4.73210 5.13104 5.27189 5.33977 5.67392 5.69559 5.72617 5.73294 6.06636 6.17489 6.41502 6.82768 7.02066 7.28084 7.36722 7.55131 7.68945 7.90527 7.91764 8.31713 8.63706 8.95614 9.55132 11.04130 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.007787 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.206052 B = 3594.682367 C = 3949.528783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.318 3.682 3 N -0.548 5.548 4 C 0.216 3.784 5 C -0.204 4.204 6 C -0.077 4.077 7 C 0.078 3.922 8 C -0.512 4.512 9 H 0.055 0.945 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.012 3.988 17 N -0.576 5.576 18 H 0.414 0.586 19 C 0.312 3.688 20 N -0.542 5.542 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.172 0.828 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 -6.384 -1.927 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.049 3.951 3 N -0.266 5.266 4 C 0.046 3.954 5 C -0.214 4.214 6 C -0.085 4.085 7 C 0.040 3.960 8 C -0.550 4.550 9 H 0.073 0.927 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.110 4.110 17 N -0.184 5.184 18 H 0.250 0.750 19 C 0.070 3.930 20 N -0.263 5.263 21 H 0.097 0.903 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.189 0.811 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.634 -6.470 -1.969 12.603 hybrid contribution 1.233 -0.268 1.061 1.649 sum -9.401 -6.738 -0.909 11.602 Atomic orbital electron populations 1.20421 0.86251 1.03407 1.03235 1.22716 0.97191 0.82550 0.92662 1.68303 1.09962 1.29058 1.19228 1.22799 0.88195 0.97800 0.86638 1.20728 0.96154 0.94466 1.10065 1.21208 0.92913 0.93580 1.00808 1.17795 0.88461 0.92158 0.97556 1.21026 1.15028 1.26932 0.92049 0.92701 1.24981 0.96041 0.96048 0.97091 1.69935 1.20318 1.32182 1.30854 0.86632 0.77884 0.78464 0.84907 1.20279 1.21232 1.20169 1.21755 0.85757 0.94484 1.09002 1.41400 1.04184 1.07343 1.65473 0.74963 1.18406 0.88150 0.88103 0.98383 1.67004 1.06654 1.31430 1.21243 0.90305 0.89903 0.90399 0.81104 0.95070 0.95055 0.92760 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.29 36.01 0.37 -0.54 15 2 C 0.32 5.49 7.63 -157.09 -1.20 4.30 15 3 N -0.55 -10.19 10.31 -10.52 -0.11 -10.30 15 4 C 0.22 4.22 11.38 -16.93 -0.19 4.03 15 5 C -0.20 -4.19 6.41 -105.14 -0.67 -4.87 15 6 C -0.08 -1.63 5.51 -102.80 -0.57 -2.20 15 7 C 0.08 1.91 5.51 -29.03 -0.16 1.75 15 8 C -0.51 -13.87 9.09 -34.44 -0.31 -14.18 15 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 11 N -0.89 -25.63 13.29 55.43 0.74 -24.90 15 12 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 16 C 0.01 0.20 11.74 -16.62 -0.20 0.01 15 17 N -0.58 -9.23 6.03 -12.11 -0.07 -9.30 15 18 H 0.41 5.06 8.96 -40.82 -0.37 4.70 15 19 C 0.31 5.91 8.49 -155.93 -1.32 4.59 15 20 N -0.54 -9.91 10.35 -9.98 -0.10 -10.01 15 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.17 3.14 8.06 -52.49 -0.42 2.72 15 25 H 0.03 0.81 8.14 -51.93 -0.42 0.38 15 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 28 H 0.18 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 254.18 15.07 3.83 3.83 Total: -1.00 -31.12 254.18 -7.95 -39.07 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -2.87 Total: 1.00 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -4.35 Total: -5.56 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.45 Total: -54.50 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.12 -7.95 -39.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.577 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds