Wall clock time and date at job start Mon Mar 30 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32140 * 118.68080 * 2 1 4 4 C 1.32280 * 121.17208 * 179.97438 * 3 2 1 5 5 C 1.39380 * 118.46879 * 0.03684 * 4 3 2 6 6 C 1.46256 * 135.18760 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.58894 * 0.02562 * 6 5 4 8 8 C 1.50701 * 109.47064 * 84.99684 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.34270 * 106.82709 * 180.26658 * 6 5 4 17 17 N 1.37041 * 109.91836 * 359.57138 * 16 6 5 18 18 H 0.97006 * 124.97021 * 180.14873 * 17 16 6 19 19 C 1.36797 * 110.05801 * 0.44668 * 17 16 6 20 20 N 1.31568 * 118.68867 * 180.02562 * 2 1 3 21 21 H 1.08994 * 109.47144 * 269.97794 * 1 2 3 22 22 H 1.08999 * 109.47233 * 29.98454 * 1 2 3 23 23 H 1.09004 * 109.46791 * 149.98279 * 1 2 3 24 24 H 1.08001 * 120.76242 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47152 * 324.99777 * 7 6 5 26 26 H 1.09001 * 109.46980 * 204.99877 * 7 6 5 27 27 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 28 28 H 1.07994 * 125.03938 * 179.74207 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1412 1.1593 0.0000 4 6 3.4627 1.2168 0.0005 5 6 4.1797 0.0216 0.0003 6 6 5.5974 -0.3379 0.0002 7 6 6.7656 0.6142 0.0009 8 6 7.0765 1.0268 1.4166 9 1 6.4875 0.6380 2.2341 10 6 8.1137 1.8997 1.6682 11 7 8.8313 2.3727 0.6728 12 14 8.4996 2.4104 3.4231 13 1 8.8402 1.2079 4.2252 14 1 9.6506 3.3488 3.4238 15 1 7.3144 3.0811 4.0155 16 6 5.6584 -1.6792 -0.0061 17 7 4.3924 -2.2041 -0.0003 18 1 4.1833 -3.1513 -0.0011 19 6 3.4669 -1.1968 -0.0001 20 7 2.1386 -1.1542 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3633 -0.8899 -0.5141 24 1 3.9743 2.1680 0.0009 25 1 6.5154 1.4967 -0.5881 26 1 7.6357 0.1221 -0.4337 27 1 9.5607 2.9871 0.8498 28 1 6.5698 -2.2585 -0.0118 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261275557.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:36 Heat of formation + Delta-G solvation = 50.479486 kcal Electronic energy + Delta-G solvation = -13703.847970 eV Core-core repulsion = 11333.317861 eV Total energy + Delta-G solvation = -2370.530108 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.79666 -39.75324 -35.65054 -34.56200 -32.74716 -32.57043 -29.34346 -27.96282 -25.28109 -25.02902 -23.02658 -20.45045 -19.67607 -18.41337 -17.67367 -17.16087 -16.53951 -16.46417 -15.26794 -14.71992 -14.46791 -14.29841 -14.07489 -13.90158 -13.24843 -13.13986 -13.01654 -12.69839 -12.55507 -11.92761 -11.86205 -11.52867 -11.33833 -10.53966 -10.19616 -9.91087 -8.87062 -8.12679 -6.25901 -0.16898 0.32010 1.42521 1.44363 1.51969 1.73035 1.76749 2.45398 2.87753 3.16599 3.19588 3.40369 3.66850 3.90510 4.27781 4.46221 4.62931 4.73934 4.79398 4.93922 5.07575 5.30462 5.40574 5.52422 5.70044 5.79978 5.94336 5.99517 6.26363 6.59971 6.85723 7.22779 7.42252 8.94085 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.007787 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.206052 B = 3594.682367 C = 3949.528783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.309 3.691 3 N -0.554 5.554 4 C 0.200 3.800 5 C -0.229 4.229 6 C -0.127 4.127 7 C 0.091 3.909 8 C -0.523 4.523 9 H 0.048 0.952 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.956 3.044 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.274 1.274 16 C 0.049 3.951 17 N -0.556 5.556 18 H 0.435 0.565 19 C 0.303 3.697 20 N -0.543 5.543 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.168 0.832 25 H 0.003 0.997 26 H 0.018 0.982 27 H 0.265 0.735 28 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 -7.790 -1.124 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.040 3.960 3 N -0.271 5.271 4 C 0.030 3.970 5 C -0.239 4.239 6 C -0.135 4.135 7 C 0.053 3.947 8 C -0.561 4.561 9 H 0.067 0.933 10 C -0.188 4.188 11 N -0.567 5.567 12 Si 0.781 3.219 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.199 1.199 16 C -0.074 4.074 17 N -0.166 5.166 18 H 0.276 0.724 19 C 0.060 3.940 20 N -0.264 5.264 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.186 0.814 25 H 0.022 0.978 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.749 -7.910 -1.166 14.212 hybrid contribution 1.508 0.131 0.767 1.697 sum -10.241 -7.779 -0.399 12.867 Atomic orbital electron populations 1.20605 0.82585 1.04956 1.04763 1.23759 0.99289 0.81907 0.91061 1.68376 1.09334 1.29958 1.19402 1.22872 0.88940 0.97846 0.87355 1.20874 0.96216 0.95595 1.11196 1.20861 0.92187 0.94739 1.05668 1.17438 0.89493 0.91934 0.95812 1.21323 1.14804 1.26887 0.93118 0.93345 1.25774 0.95960 0.96089 1.00975 1.70045 1.20903 1.32888 1.32868 0.85640 0.77679 0.78330 0.80225 1.19332 1.20690 1.19950 1.22129 0.87131 0.93487 1.04676 1.41341 1.03108 1.08080 1.64029 0.72397 1.18633 0.88685 0.88251 0.98433 1.67182 1.06017 1.31689 1.21560 0.88579 0.88544 0.88651 0.81442 0.97849 0.96393 0.92640 0.77228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.29 71.24 0.73 -0.79 15 2 C 0.31 10.16 7.63 138.71 1.06 11.22 15 3 N -0.55 -20.33 10.31 -187.19 -1.93 -22.26 15 4 C 0.20 8.00 11.38 84.90 0.97 8.97 15 5 C -0.23 -9.44 6.41 -20.20 -0.13 -9.57 15 6 C -0.13 -5.37 5.51 -18.68 -0.10 -5.47 15 7 C 0.09 4.61 5.51 29.10 0.16 4.77 15 8 C -0.52 -28.82 9.09 25.60 0.23 -28.58 15 9 H 0.05 2.67 7.74 -2.91 -0.02 2.65 15 10 C 0.01 0.58 5.46 84.66 0.46 1.04 15 11 N -0.93 -54.12 13.29 21.45 0.28 -53.83 15 12 Si 0.96 43.53 29.54 68.60 2.03 45.55 15 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 14 H -0.28 -12.49 7.11 99.48 0.71 -11.79 15 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 16 C 0.05 1.61 11.74 82.97 0.97 2.59 15 17 N -0.56 -16.42 6.03 -192.22 -1.16 -17.58 15 18 H 0.44 9.16 8.96 -92.70 -0.83 8.33 15 19 C 0.30 11.06 8.49 134.15 1.14 12.19 15 20 N -0.54 -18.84 10.35 -185.48 -1.92 -20.76 15 21 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.10 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.09 1.74 8.14 -2.38 -0.02 1.72 15 24 H 0.17 6.54 8.06 -2.91 -0.02 6.51 15 25 H 0.00 0.18 8.14 -2.39 -0.02 0.16 15 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 15 28 H 0.21 5.36 8.06 -2.91 -0.02 5.34 15 Total: -1.00 -67.08 254.18 3.15 -63.93 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.35 Total: 8.59 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.49 Total: -3.64 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -4.72 Total: -114.43 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.08 3.15 -63.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261275557.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.407 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds