Wall clock time and date at job start Mon Mar 30 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30389 * 126.19773 * 2 1 4 4 N 1.39939 * 109.96887 * 179.97438 * 3 2 1 5 5 C 1.46507 * 125.40068 * 180.02562 * 4 3 2 6 6 C 1.35788 * 109.19977 * 359.75669 * 4 3 2 7 7 C 1.40794 * 107.04883 * 0.38061 * 6 4 3 8 8 C 1.39933 * 119.15422 * 179.79699 * 7 6 4 9 9 N 1.31854 * 120.75271 * 359.74855 * 8 7 6 10 10 C 1.31794 * 122.65747 * 0.02562 * 9 8 7 11 11 C 1.40604 * 121.05424 * 359.97438 * 10 9 8 12 12 C 1.40939 * 120.83401 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00655 * 215.29104 * 12 11 10 14 14 C 1.39989 * 119.99806 * 35.30100 * 12 11 10 15 15 N 1.30836 * 120.00196 * 22.97580 * 14 12 11 16 16 Si 1.86803 * 119.99941 * 202.97971 * 14 12 11 17 17 H 1.48499 * 109.47026 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47002 * 300.00169 * 16 14 12 19 19 H 1.48502 * 109.46941 * 59.99884 * 16 14 12 20 20 H 1.09001 * 109.47697 * 270.02920 * 1 2 3 21 21 H 1.09007 * 109.47299 * 30.02756 * 1 2 3 22 22 H 1.09004 * 109.47645 * 150.02303 * 1 2 3 23 23 H 1.08997 * 109.47363 * 95.63154 * 5 4 3 24 24 H 1.09008 * 109.46962 * 215.62924 * 5 4 3 25 25 H 1.08998 * 109.46777 * 335.62439 * 5 4 3 26 26 H 1.08005 * 119.62462 * 179.72778 * 8 7 6 27 27 H 1.08006 * 119.47380 * 179.97438 * 10 9 8 28 28 H 0.96999 * 119.99647 * 5.74855 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2770 1.0522 0.0000 4 7 3.6206 0.6611 0.0006 5 6 4.7693 1.5706 0.0013 6 6 3.6910 -0.6949 0.0064 7 6 2.3682 -1.1770 0.0007 8 6 2.1461 -2.5585 0.0006 9 7 3.1578 -3.4041 0.0008 10 6 4.4150 -3.0087 0.0016 11 6 4.7456 -1.6421 0.0018 12 6 6.0917 -1.2245 0.0032 13 1 6.3807 -0.3353 0.5437 14 6 7.0541 -1.9622 -0.6962 15 7 6.6922 -2.7372 -1.6862 16 14 8.8552 -1.8402 -0.2158 17 1 9.6645 -2.7131 -1.1037 18 1 9.3104 -0.4335 -0.3550 19 1 9.0224 -2.2774 1.1935 20 1 -0.3634 0.0005 1.0276 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3634 -0.8902 -0.5135 23 1 5.1163 1.7169 1.0241 24 1 5.5730 1.1413 -0.5971 25 1 4.4732 2.5300 -0.4228 26 1 1.1344 -2.9366 0.0006 27 1 5.2041 -3.7463 0.0022 28 1 5.7710 -2.7377 -1.9899 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:25 Heat of formation + Delta-G solvation = 72.852557 kcal Electronic energy + Delta-G solvation = -14211.103805 eV Core-core repulsion = 11841.543866 eV Total energy + Delta-G solvation = -2369.559939 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39696 -36.99813 -34.52192 -33.04536 -30.09880 -29.13461 -28.84714 -25.76148 -24.40344 -22.05980 -21.31007 -19.23215 -17.73319 -16.25776 -15.86761 -14.91947 -14.74201 -14.19187 -13.39571 -13.11020 -13.09350 -12.70231 -12.62179 -12.22479 -12.07177 -11.62829 -11.26257 -11.13489 -10.76233 -10.50559 -10.26891 -9.83760 -9.31933 -8.88153 -8.23357 -7.88212 -7.43474 -7.18526 -4.54781 1.96206 2.76373 3.02098 3.09209 3.20664 3.27007 3.33404 3.90391 4.50783 5.12632 5.25879 5.31729 5.64715 5.73956 5.80629 5.88970 5.94273 6.04738 6.10041 6.25982 6.45494 6.56124 6.93472 7.14580 7.36162 7.53277 7.71988 7.78469 8.00673 8.21631 8.51443 8.61160 9.54535 9.91618 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.010672 C = 0.008659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.357317 B = 2623.110162 C = 3233.026064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.072 3.928 3 N -0.279 5.279 4 N -0.389 5.389 5 C 0.115 3.885 6 C 0.085 3.915 7 C -0.191 4.191 8 C 0.027 3.973 9 N -0.467 5.467 10 C -0.028 4.028 11 C 0.058 3.942 12 C -0.519 4.519 13 H 0.079 0.921 14 C 0.039 3.961 15 N -0.789 5.789 16 Si 1.067 2.933 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.273 1.273 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.137 0.863 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 4.932 1.853 5.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 N -0.096 5.096 4 N -0.178 5.178 5 C -0.027 4.027 6 C -0.036 4.036 7 C -0.202 4.202 8 C -0.141 4.141 9 N -0.175 5.175 10 C -0.184 4.184 11 C 0.051 3.949 12 C -0.548 4.548 13 H 0.097 0.903 14 C -0.184 4.184 15 N -0.412 5.412 16 Si 0.890 3.110 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.198 1.198 20 H 0.091 0.909 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.091 0.909 26 H 0.146 0.854 27 H 0.155 0.845 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.060 4.771 1.448 5.097 hybrid contribution -1.232 0.808 0.353 1.515 sum -2.292 5.579 1.801 6.295 Atomic orbital electron populations 1.20050 0.86723 1.02795 1.02424 1.23240 0.95896 0.89495 1.01832 1.76370 0.87702 1.23937 1.21640 1.47427 1.03151 1.03246 1.63939 1.21759 0.85896 0.92738 1.02285 1.19291 0.95727 0.84171 1.04368 1.20507 0.91874 0.95283 1.12501 1.21272 0.96784 0.86422 1.09602 1.66906 1.00358 1.39281 1.10908 1.22266 0.91850 0.92605 1.11680 1.17810 0.91846 0.90791 0.94453 1.20341 0.92199 1.12517 1.29734 0.90254 1.27033 1.07448 0.91282 0.92591 1.70452 1.23896 1.28833 1.17974 0.83601 0.72497 0.77559 0.77380 1.19629 1.20133 1.19822 0.90947 0.91356 0.90545 0.92391 0.88762 0.90914 0.85392 0.84518 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.48 36.00 0.38 -0.51 15 2 C 0.07 1.46 7.44 -80.17 -0.60 0.87 15 3 N -0.28 -6.05 12.42 34.84 0.43 -5.62 15 4 N -0.39 -8.83 4.01 -65.09 -0.26 -9.09 15 5 C 0.12 2.12 10.30 59.85 0.62 2.73 15 6 C 0.08 2.12 6.86 -83.81 -0.57 1.55 15 7 C -0.19 -4.50 6.37 -105.26 -0.67 -5.17 15 8 C 0.03 0.62 11.27 -16.91 -0.19 0.43 15 9 N -0.47 -11.83 10.30 -12.22 -0.13 -11.95 15 10 C -0.03 -0.73 9.26 -16.68 -0.15 -0.89 15 11 C 0.06 1.52 5.08 -106.64 -0.54 0.98 15 12 C -0.52 -12.88 7.60 -37.90 -0.29 -13.17 15 13 H 0.08 1.87 6.54 -52.49 -0.34 1.52 15 14 C 0.04 0.93 4.96 -17.32 -0.09 0.84 15 15 N -0.79 -20.33 12.69 55.55 0.70 -19.62 15 16 Si 1.07 20.36 29.99 -169.99 -5.10 15.26 15 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 18 H -0.28 -4.92 7.11 56.52 0.40 -4.52 15 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.07 0.88 8.14 -51.92 -0.42 0.46 15 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.09 1.79 6.46 -51.92 -0.34 1.45 15 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.13 2.52 8.06 -52.48 -0.42 2.09 15 27 H 0.14 3.63 7.16 -52.48 -0.38 3.25 15 28 H 0.30 8.05 6.94 -40.82 -0.28 7.77 15 LS Contribution 246.20 15.07 3.71 3.71 Total: -1.00 -29.34 246.20 -5.42 -34.75 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.67 Total: 4.90 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.11 Total: -12.33 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.75 Total: -46.28 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.10 Total: 15.26 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.34 -5.42 -34.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.604 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds