Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32344 * 120.63685 * 2 1 4 4 C 1.32102 * 121.49176 * 180.02562 * 3 2 1 5 5 N 1.31553 * 122.29001 * 0.02562 * 4 3 2 6 6 C 1.33208 * 120.23966 * 359.97438 * 5 4 3 7 7 C 1.45914 * 134.99225 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.47437 * 0.03009 * 7 6 5 9 9 C 1.50706 * 109.47294 * 84.99365 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.34587 * 107.05684 * 180.28816 * 7 6 5 18 18 N 1.36481 * 109.98549 * 359.56946 * 17 7 6 19 19 H 0.96998 * 125.09097 * 180.14513 * 18 17 7 20 20 C 1.37504 * 109.82979 * 0.44717 * 18 17 7 21 21 H 1.09002 * 109.47051 * 90.00122 * 1 2 3 22 22 H 1.08993 * 109.47210 * 209.99872 * 1 2 3 23 23 H 1.08999 * 109.46804 * 330.00753 * 1 2 3 24 24 H 1.07996 * 118.85489 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.46665 * 324.99746 * 8 7 6 26 26 H 1.09000 * 109.47722 * 205.00078 * 8 7 6 27 27 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 28 28 H 1.07999 * 125.00817 * 179.74101 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1814 1.1387 0.0000 4 6 3.5023 1.1584 -0.0005 5 7 4.2215 0.0569 -0.0015 6 6 3.6248 -1.1340 -0.0016 7 6 4.0852 -2.5186 -0.0030 8 6 5.5177 -2.9863 -0.0043 9 6 6.0347 -3.0255 1.4107 10 1 5.3902 -2.7406 2.2291 11 6 7.3304 -3.4250 1.6605 12 7 7.7814 -3.4597 2.8954 13 14 8.4450 -3.9185 0.2449 14 1 9.1727 -2.7232 -0.2520 15 1 9.4222 -4.9331 0.7147 16 1 7.6261 -4.4914 -0.8534 17 6 2.9888 -3.2992 -0.0087 18 7 1.8649 -2.5249 -0.0014 19 1 0.9554 -2.8621 -0.0015 20 6 2.2146 -1.1951 -0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5137 24 1 4.0093 2.1120 -0.0001 25 1 6.1239 -2.2984 -0.5937 26 1 5.5738 -3.9841 -0.4395 27 1 8.6929 -3.7412 3.0711 28 1 2.9971 -4.3791 -0.0150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279354.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = 72.340407 kcal Electronic energy + Delta-G solvation = -13795.039529 eV Core-core repulsion = 11425.457382 eV Total energy + Delta-G solvation = -2369.582148 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50676 -38.29383 -34.38867 -33.08559 -31.08494 -30.66206 -28.09624 -27.19411 -23.36860 -22.53476 -22.44192 -18.78262 -18.12007 -16.72174 -16.62611 -15.78895 -15.14577 -14.60930 -14.13079 -13.27868 -13.01446 -12.82420 -12.72490 -12.57947 -12.42879 -11.84479 -11.33453 -10.88898 -10.56020 -10.44532 -10.19475 -9.89882 -9.31072 -8.66119 -8.48828 -8.34115 -7.43331 -5.98504 -3.95979 1.19641 1.62363 3.09982 3.27036 3.36517 3.43028 3.44883 4.32539 4.34103 4.49562 4.57134 4.72634 5.00453 5.33798 5.39644 5.43898 5.47021 5.60081 5.85106 6.06192 6.22495 6.75425 6.81048 7.00267 7.17926 7.46894 7.55439 7.67391 7.80844 8.59268 8.67651 9.06485 9.62209 11.15036 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.008001 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.057820 B = 3498.804306 C = 3765.741259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.169 3.831 3 N -0.516 5.516 4 C 0.253 3.747 5 N -0.465 5.465 6 C 0.138 3.862 7 C -0.096 4.096 8 C 0.049 3.951 9 C -0.504 4.504 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.288 1.288 16 H -0.265 1.265 17 C 0.049 3.951 18 N -0.581 5.581 19 H 0.414 0.586 20 C -0.012 4.012 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.191 0.809 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.263 0.737 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.018 2.452 -7.587 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.013 3.987 3 N -0.231 5.231 4 C -0.037 4.037 5 N -0.178 5.178 6 C -0.003 4.003 7 C -0.103 4.103 8 C 0.011 3.989 9 C -0.542 4.542 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.706 3.294 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.079 4.079 18 N -0.185 5.185 19 H 0.251 0.749 20 C -0.125 4.125 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.101 0.899 24 H 0.208 0.792 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.375 3.196 -7.474 15.651 hybrid contribution -0.064 -1.123 -0.459 1.215 sum -13.438 2.073 -7.933 15.742 Atomic orbital electron populations 1.20640 0.88689 1.03419 1.02961 1.20624 0.96400 0.85551 0.96166 1.68096 1.11052 1.27866 1.16113 1.24549 0.85873 0.96700 0.96626 1.67858 1.40947 0.97448 1.11533 1.20303 0.88164 0.93100 0.98720 1.20681 0.97327 0.87501 1.04768 1.18192 0.86431 0.95744 0.98523 1.20918 0.97842 1.44504 0.90963 0.91230 1.24970 0.97709 0.95175 0.95451 1.69904 1.16850 1.48520 1.19026 0.86801 0.80836 0.78709 0.83096 1.20119 1.21450 1.18971 1.21836 0.83957 0.97083 1.05004 1.41338 1.08580 1.03233 1.65389 0.74915 1.19673 0.97377 0.86626 1.08874 0.90317 0.91336 0.89885 0.79222 0.95295 0.95390 0.92747 0.80317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.23 36.00 0.37 -0.65 15 2 C 0.17 2.61 6.85 -82.13 -0.56 2.05 15 3 N -0.52 -8.70 10.35 -10.72 -0.11 -8.81 15 4 C 0.25 4.53 12.26 -92.10 -1.13 3.40 15 5 N -0.47 -10.08 10.50 -11.40 -0.12 -10.20 15 6 C 0.14 2.96 7.55 -83.09 -0.63 2.33 15 7 C -0.10 -2.05 5.49 -102.84 -0.57 -2.62 15 8 C 0.05 1.20 4.57 -29.03 -0.13 1.06 15 9 C -0.50 -14.67 9.65 -34.44 -0.33 -15.00 15 10 H 0.07 2.24 7.98 -52.49 -0.42 1.82 15 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 12 N -0.90 -28.28 13.96 55.43 0.77 -27.51 15 13 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 15 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 16 H -0.27 -6.19 6.54 56.52 0.37 -5.82 15 17 C 0.05 0.81 11.73 -16.77 -0.20 0.61 15 18 N -0.58 -8.11 6.05 -10.63 -0.06 -8.18 15 19 H 0.41 3.88 8.96 -40.82 -0.37 3.52 15 20 C -0.01 -0.21 7.04 -83.98 -0.59 -0.80 15 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.07 0.57 8.10 -51.93 -0.42 0.15 15 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.19 2.71 8.06 -52.49 -0.42 2.29 15 25 H 0.03 0.73 7.57 -51.93 -0.39 0.34 15 26 H 0.03 0.64 7.20 -51.93 -0.37 0.27 15 27 H 0.26 7.67 8.31 -40.82 -0.34 7.34 15 28 H 0.18 2.32 8.06 -52.49 -0.42 1.90 15 LS Contribution 250.45 15.07 3.77 3.77 Total: -1.00 -35.03 250.45 -7.11 -42.15 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -2.83 Total: -0.65 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -3.87 Total: -7.71 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.48 Total: -54.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -35.03 -7.11 -42.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279354.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.486 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds