Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32344 * 120.63685 * 2 1 4 4 C 1.32102 * 121.49176 * 180.02562 * 3 2 1 5 5 N 1.31553 * 122.29001 * 0.02562 * 4 3 2 6 6 C 1.33208 * 120.23966 * 359.97438 * 5 4 3 7 7 C 1.45914 * 134.99225 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.47437 * 0.03009 * 7 6 5 9 9 C 1.50706 * 109.47294 * 84.99365 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.34587 * 107.05684 * 180.28816 * 7 6 5 18 18 N 1.36481 * 109.98549 * 359.56946 * 17 7 6 19 19 H 0.96998 * 125.09097 * 180.14513 * 18 17 7 20 20 C 1.37504 * 109.82979 * 0.44717 * 18 17 7 21 21 H 1.09002 * 109.47051 * 90.00122 * 1 2 3 22 22 H 1.08993 * 109.47210 * 209.99872 * 1 2 3 23 23 H 1.08999 * 109.46804 * 330.00753 * 1 2 3 24 24 H 1.07996 * 118.85489 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.46665 * 324.99746 * 8 7 6 26 26 H 1.09000 * 109.47722 * 205.00078 * 8 7 6 27 27 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 28 28 H 1.07999 * 125.00817 * 179.74101 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1814 1.1387 0.0000 4 6 3.5023 1.1584 -0.0005 5 7 4.2215 0.0569 -0.0015 6 6 3.6248 -1.1340 -0.0016 7 6 4.0852 -2.5186 -0.0030 8 6 5.5177 -2.9863 -0.0043 9 6 6.0347 -3.0255 1.4107 10 1 5.3902 -2.7406 2.2291 11 6 7.3304 -3.4250 1.6605 12 7 7.7814 -3.4597 2.8954 13 14 8.4450 -3.9185 0.2449 14 1 9.1727 -2.7232 -0.2520 15 1 9.4222 -4.9331 0.7147 16 1 7.6261 -4.4914 -0.8534 17 6 2.9888 -3.2992 -0.0087 18 7 1.8649 -2.5249 -0.0014 19 1 0.9554 -2.8621 -0.0015 20 6 2.2146 -1.1951 -0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5137 24 1 4.0093 2.1120 -0.0001 25 1 6.1239 -2.2984 -0.5937 26 1 5.5738 -3.9841 -0.4395 27 1 8.6929 -3.7412 3.0711 28 1 2.9971 -4.3791 -0.0150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279354.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = 47.132309 kcal Electronic energy + Delta-G solvation = -13796.132634 eV Core-core repulsion = 11425.457382 eV Total energy + Delta-G solvation = -2370.675253 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.82854 -39.61516 -35.83746 -34.99672 -32.90544 -31.89343 -29.51901 -28.67372 -24.79291 -24.40333 -23.72122 -20.18907 -19.50912 -18.92402 -17.97533 -17.07186 -16.48359 -16.19893 -15.84463 -14.85991 -14.41129 -14.33189 -13.97658 -13.80615 -13.74738 -13.33660 -13.06269 -12.42095 -12.31908 -12.12676 -11.87235 -11.63755 -11.43299 -10.74615 -10.04077 -9.65408 -8.88091 -8.25055 -6.28295 -0.10108 0.26817 1.38790 1.41783 1.52650 1.68946 2.06395 2.39666 2.95171 3.09380 3.20300 3.28379 3.50968 3.82330 4.14909 4.40689 4.57709 4.66626 4.72308 4.81500 5.06878 5.07951 5.31694 5.40105 5.51468 5.67275 5.91234 6.20501 6.33436 6.60654 6.76639 7.32155 7.34581 8.92304 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.008001 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.057820 B = 3498.804306 C = 3765.741259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.181 3.819 3 N -0.525 5.525 4 C 0.251 3.749 5 N -0.522 5.522 6 C 0.093 3.907 7 C -0.168 4.168 8 C 0.061 3.939 9 C -0.508 4.508 10 H 0.018 0.982 11 C 0.004 3.996 12 N -0.955 5.955 13 Si 0.953 3.047 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.236 1.236 17 C 0.093 3.907 18 N -0.550 5.550 19 H 0.441 0.559 20 C -0.020 4.020 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.214 0.786 25 H 0.011 0.989 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.420 1.475 -9.384 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.024 3.976 3 N -0.241 5.241 4 C -0.039 4.039 5 N -0.236 5.236 6 C -0.046 4.046 7 C -0.175 4.175 8 C 0.023 3.977 9 C -0.547 4.547 10 H 0.036 0.964 11 C -0.192 4.192 12 N -0.597 5.597 13 Si 0.776 3.224 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.159 1.159 17 C -0.038 4.038 18 N -0.156 5.156 19 H 0.283 0.717 20 C -0.134 4.134 21 H 0.122 0.878 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.230 0.770 25 H 0.029 0.971 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -15.848 2.209 -9.282 18.499 hybrid contribution 0.519 -0.751 0.172 0.929 sum -15.329 1.458 -9.110 17.891 Atomic orbital electron populations 1.20845 0.84366 1.05182 1.05002 1.21552 0.98877 0.84405 0.92723 1.68250 1.10394 1.28481 1.16983 1.25066 0.86682 0.96824 0.95341 1.67810 1.42790 0.98648 1.14398 1.20622 0.90614 0.93062 1.00306 1.20572 0.97137 0.88996 1.10841 1.17897 0.88673 0.96245 0.94903 1.21182 0.97494 1.43634 0.92341 0.96373 1.25992 0.99534 0.95201 0.98501 1.70074 1.17569 1.50248 1.21764 0.85628 0.78579 0.78397 0.79835 1.20255 1.20607 1.15913 1.22279 0.83122 0.98376 0.99978 1.41259 1.09483 1.01851 1.62979 0.71659 1.19725 0.95818 0.88307 1.09565 0.87830 0.88724 0.89030 0.76951 0.97100 0.93482 0.92550 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 10.23 71.24 0.73 -0.83 15 2 C 0.18 5.16 6.85 42.64 0.29 5.46 15 3 N -0.53 -17.13 10.35 -187.81 -1.94 -19.08 15 4 C 0.25 9.12 12.26 180.86 2.22 11.34 15 5 N -0.52 -23.51 10.50 -189.99 -2.00 -25.51 15 6 C 0.09 4.03 7.55 41.64 0.31 4.34 15 7 C -0.17 -7.21 5.49 -18.71 -0.10 -7.31 15 8 C 0.06 3.01 4.57 29.10 0.13 3.14 15 9 C -0.51 -30.76 9.65 25.60 0.25 -30.52 15 10 H 0.02 1.23 7.98 -2.91 -0.02 1.21 15 11 C 0.00 0.22 5.47 84.65 0.46 0.68 15 12 N -0.96 -62.02 13.96 21.44 0.30 -61.72 15 13 Si 0.95 45.48 27.47 68.60 1.88 47.37 15 14 H -0.28 -13.19 7.11 99.48 0.71 -12.48 15 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 15 16 H -0.24 -10.08 6.54 99.48 0.65 -9.43 15 17 C 0.09 2.82 11.73 83.13 0.98 3.79 15 18 N -0.55 -13.44 6.05 -187.56 -1.13 -14.58 15 19 H 0.44 6.02 8.96 -92.71 -0.83 5.19 15 20 C -0.02 -0.67 7.04 39.12 0.28 -0.39 15 21 H 0.10 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.09 1.06 8.10 -2.39 -0.02 1.04 15 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.21 6.18 8.06 -2.91 -0.02 6.16 15 25 H 0.01 0.56 7.57 -2.39 -0.02 0.54 15 26 H 0.05 2.10 7.20 -2.39 -0.02 2.08 15 27 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 28 H 0.22 4.69 8.06 -2.91 -0.02 4.67 15 Total: -1.00 -82.12 250.45 2.95 -79.17 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 0.30 Total: 4.64 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.54 Total: -10.29 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -4.78 Total: -120.88 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -82.12 2.95 -79.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279354.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.299 kcal (2) G-P(sol) polarization free energy of solvation -82.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds