Wall clock time and date at job start Mon Mar 30 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36487 * 125.08284 * 2 1 4 4 C 1.34589 * 109.96998 * 180.16702 * 3 2 1 5 5 C 1.50697 * 126.46715 * 179.86653 * 4 3 2 6 6 C 1.50700 * 109.47266 * 264.68806 * 5 4 3 7 7 H 1.07999 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00047 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99792 * 359.72305 * 8 6 5 10 10 Si 1.86795 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47021 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47081 * 119.99727 * 10 8 6 13 13 H 1.48501 * 109.47213 * 240.00099 * 10 8 6 14 14 C 1.45914 * 107.05927 * 359.60752 * 4 3 2 15 15 N 1.33233 * 134.99107 * 180.24115 * 14 4 3 16 16 C 1.31528 * 120.24678 * 179.97438 * 15 14 4 17 17 N 1.32133 * 122.28342 * 359.97438 * 16 15 14 18 18 C 1.32308 * 121.49345 * 0.02562 * 17 16 15 19 19 C 1.37493 * 125.08194 * 179.72235 * 2 1 3 20 20 H 1.08999 * 109.47170 * 270.27923 * 1 2 3 21 21 H 1.09005 * 109.46930 * 30.27442 * 1 2 3 22 22 H 1.09003 * 109.47362 * 150.27460 * 1 2 3 23 23 H 1.07995 * 125.01247 * 0.02562 * 3 2 1 24 24 H 1.09004 * 109.47205 * 144.68900 * 5 4 3 25 25 H 1.08997 * 109.47395 * 24.69392 * 5 4 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 9 8 6 27 27 H 1.08000 * 118.85940 * 180.02562 * 16 15 14 28 28 H 1.08006 * 120.63567 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.1169 0.0000 4 6 3.5488 0.7660 -0.0037 5 6 4.7295 1.7025 -0.0078 6 6 5.2006 1.9108 -1.4240 7 1 4.6952 1.4150 -2.2396 8 6 6.2767 2.7344 -1.6785 9 7 6.8887 3.3424 -0.6858 10 14 6.8602 2.9932 -3.4340 11 1 6.0059 2.2075 -4.3605 12 1 6.7693 4.4348 -3.7784 13 1 8.2696 2.5423 -3.5588 14 6 3.5984 -0.6923 0.0033 15 7 4.5721 -1.6017 0.0077 16 6 4.2808 -2.8842 0.0143 17 7 3.0351 -3.3250 0.0174 18 6 2.0072 -2.4920 0.0135 19 6 2.2552 -1.1251 0.0055 20 1 -0.3633 0.0050 1.0276 21 1 -0.3633 0.8876 -0.5181 22 1 -0.3634 -0.8924 -0.5096 23 1 1.8818 2.1323 0.0004 24 1 5.5371 1.2716 0.5841 25 1 4.4353 2.6600 0.4219 26 1 7.6460 3.9215 -0.8648 27 1 5.0877 -3.6021 0.0182 28 1 0.9945 -2.8675 0.0165 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:17 Heat of formation + Delta-G solvation = 80.737470 kcal Electronic energy + Delta-G solvation = -13813.624673 eV Core-core repulsion = 11444.406649 eV Total energy + Delta-G solvation = -2369.218024 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43751 -38.35658 -34.14474 -32.83527 -31.55134 -30.12567 -28.27298 -25.62451 -23.78451 -23.17072 -21.93692 -19.19584 -17.28617 -16.92929 -16.23605 -15.75635 -15.35323 -14.43599 -14.30098 -13.79310 -13.24371 -12.73265 -12.59266 -12.35673 -12.00713 -11.54872 -11.07366 -10.85110 -10.64109 -10.48589 -10.44040 -9.72795 -9.34015 -8.60123 -8.32725 -8.27701 -7.31162 -5.94714 -3.97009 1.27680 1.65523 2.97475 3.17792 3.34754 3.42448 3.47876 4.40818 4.53749 4.55642 4.62438 4.79118 4.89281 4.99652 5.15304 5.36670 5.39947 5.56560 5.72340 6.22724 6.32450 6.84643 6.95570 7.21275 7.48606 7.57793 7.67847 7.87606 8.00992 8.43177 8.71011 9.06412 9.65496 11.14966 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.008617 C = 0.007597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.085616 B = 3248.666552 C = 3684.823577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.478 5.478 3 C 0.042 3.958 4 C -0.096 4.096 5 C 0.082 3.918 6 C -0.502 4.502 7 H 0.053 0.947 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.135 3.865 15 N -0.459 5.459 16 C 0.243 3.757 17 N -0.515 5.515 18 C 0.143 3.857 19 C -0.015 4.015 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.176 0.824 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.190 0.810 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 -6.745 1.920 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.163 5.163 3 C -0.084 4.084 4 C -0.102 4.102 5 C 0.045 3.955 6 C -0.540 4.540 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.209 1.209 14 C -0.007 4.007 15 N -0.171 5.171 16 C -0.047 4.047 17 N -0.229 5.229 18 C -0.033 4.033 19 C -0.127 4.127 20 H 0.085 0.915 21 H 0.102 0.898 22 H 0.095 0.905 23 H 0.193 0.807 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.206 0.794 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.251 -7.200 1.954 14.344 hybrid contribution -0.370 0.732 -1.026 1.313 sum -12.622 -6.468 0.929 14.213 Atomic orbital electron populations 1.21902 0.77332 1.04041 1.02687 1.43466 1.05573 1.03921 1.63383 1.21859 0.89705 0.90866 1.05964 1.21196 0.95589 0.89928 1.03520 1.17759 0.88693 0.91385 0.97689 1.21070 1.13968 1.26949 0.92047 0.92859 1.24970 0.96429 0.95875 0.97023 1.69963 1.22027 1.30821 1.30725 0.86519 0.78724 0.77654 0.85016 1.19896 1.21066 1.20944 1.20373 0.86608 0.94772 0.98958 1.67880 1.36744 1.01675 1.10792 1.24551 0.92324 0.90501 0.97314 1.68238 1.00571 1.38829 1.15267 1.21958 0.98649 0.85696 0.97016 1.19938 0.93721 0.90654 1.08413 0.91478 0.89766 0.90466 0.80663 0.94692 0.95285 0.93020 0.79354 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 11.05 59.85 0.66 1.42 15 2 N -0.48 -7.29 3.17 -121.78 -0.39 -7.68 15 3 C 0.04 0.75 11.20 -16.77 -0.19 0.56 15 4 C -0.10 -2.14 5.49 -102.84 -0.57 -2.71 15 5 C 0.08 2.17 5.50 -29.04 -0.16 2.01 15 6 C -0.50 -14.46 9.09 -34.44 -0.31 -14.77 15 7 H 0.05 1.55 7.74 -52.49 -0.41 1.14 15 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 9 N -0.90 -26.92 13.29 55.43 0.74 -26.19 15 10 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 15 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 14 C 0.13 2.95 7.55 -83.10 -0.63 2.32 15 15 N -0.46 -10.10 10.50 -11.40 -0.12 -10.22 15 16 C 0.24 4.40 12.26 -92.09 -1.13 3.27 15 17 N -0.51 -8.72 10.41 -14.49 -0.15 -8.87 15 18 C 0.14 2.21 11.31 -17.09 -0.19 2.01 15 19 C -0.01 -0.26 6.84 -83.98 -0.57 -0.84 15 20 H 0.07 0.52 8.14 -51.93 -0.42 0.09 15 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.08 0.59 8.14 -51.93 -0.42 0.16 15 23 H 0.18 2.56 8.06 -52.49 -0.42 2.13 15 24 H 0.03 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 27 H 0.19 2.72 8.06 -52.49 -0.42 2.30 15 28 H 0.15 1.72 8.06 -52.48 -0.42 1.29 15 LS Contribution 254.90 15.07 3.84 3.84 Total: -1.00 -34.03 254.90 -7.21 -41.24 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -2.92 Total: -4.07 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.19 Total: -5.14 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.08 Total: -52.95 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.03 -7.21 -41.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.978 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds