Wall clock time and date at job start Mon Mar 30 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36487 * 125.08284 * 2 1 4 4 C 1.34589 * 109.96998 * 180.16702 * 3 2 1 5 5 C 1.50697 * 126.46715 * 179.86653 * 4 3 2 6 6 C 1.50700 * 109.47266 * 264.68806 * 5 4 3 7 7 H 1.07999 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00047 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99792 * 359.72305 * 8 6 5 10 10 Si 1.86795 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47021 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47081 * 119.99727 * 10 8 6 13 13 H 1.48501 * 109.47213 * 240.00099 * 10 8 6 14 14 C 1.45914 * 107.05927 * 359.60752 * 4 3 2 15 15 N 1.33233 * 134.99107 * 180.24115 * 14 4 3 16 16 C 1.31528 * 120.24678 * 179.97438 * 15 14 4 17 17 N 1.32133 * 122.28342 * 359.97438 * 16 15 14 18 18 C 1.32308 * 121.49345 * 0.02562 * 17 16 15 19 19 C 1.37493 * 125.08194 * 179.72235 * 2 1 3 20 20 H 1.08999 * 109.47170 * 270.27923 * 1 2 3 21 21 H 1.09005 * 109.46930 * 30.27442 * 1 2 3 22 22 H 1.09003 * 109.47362 * 150.27460 * 1 2 3 23 23 H 1.07995 * 125.01247 * 0.02562 * 3 2 1 24 24 H 1.09004 * 109.47205 * 144.68900 * 5 4 3 25 25 H 1.08997 * 109.47395 * 24.69392 * 5 4 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 9 8 6 27 27 H 1.08000 * 118.85940 * 180.02562 * 16 15 14 28 28 H 1.08006 * 120.63567 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.1169 0.0000 4 6 3.5488 0.7660 -0.0037 5 6 4.7295 1.7025 -0.0078 6 6 5.2006 1.9108 -1.4240 7 1 4.6952 1.4150 -2.2396 8 6 6.2767 2.7344 -1.6785 9 7 6.8887 3.3424 -0.6858 10 14 6.8602 2.9932 -3.4340 11 1 6.0059 2.2075 -4.3605 12 1 6.7693 4.4348 -3.7784 13 1 8.2696 2.5423 -3.5588 14 6 3.5984 -0.6923 0.0033 15 7 4.5721 -1.6017 0.0077 16 6 4.2808 -2.8842 0.0143 17 7 3.0351 -3.3250 0.0174 18 6 2.0072 -2.4920 0.0135 19 6 2.2552 -1.1251 0.0055 20 1 -0.3633 0.0050 1.0276 21 1 -0.3633 0.8876 -0.5181 22 1 -0.3634 -0.8924 -0.5096 23 1 1.8818 2.1323 0.0004 24 1 5.5371 1.2716 0.5841 25 1 4.4353 2.6600 0.4219 26 1 7.6460 3.9215 -0.8648 27 1 5.0877 -3.6021 0.0182 28 1 0.9945 -2.8675 0.0165 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:17 Heat of formation + Delta-G solvation = 58.309454 kcal Electronic energy + Delta-G solvation = -13814.597224 eV Core-core repulsion = 11444.406649 eV Total energy + Delta-G solvation = -2370.190575 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.78580 -39.68849 -35.82388 -34.62680 -33.04370 -31.55480 -29.87502 -27.07390 -25.15602 -24.98136 -23.36988 -20.65017 -18.69758 -18.43084 -18.20848 -17.06884 -16.60762 -16.38349 -15.61630 -14.91890 -14.53979 -14.40038 -14.18611 -13.92690 -13.36012 -13.00743 -12.84256 -12.55969 -12.41012 -12.16336 -11.92696 -11.71637 -11.44740 -10.57669 -9.99854 -9.63216 -8.80961 -8.13202 -6.27199 -0.06324 0.29128 1.37212 1.39592 1.51490 1.71696 1.80560 2.43277 3.01993 3.14011 3.28066 3.37084 3.60467 3.72526 3.98779 4.30556 4.52374 4.55535 4.77924 4.80982 4.84790 5.30604 5.41814 5.46542 5.62859 5.78477 6.02651 6.18873 6.25479 6.33300 6.83491 7.33838 7.40154 8.93869 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.008617 C = 0.007597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.085616 B = 3248.666552 C = 3684.823577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.461 5.461 3 C 0.080 3.920 4 C -0.165 4.165 5 C 0.098 3.902 6 C -0.517 4.517 7 H 0.043 0.957 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.269 1.269 13 H -0.280 1.280 14 C 0.088 3.912 15 N -0.517 5.517 16 C 0.243 3.757 17 N -0.519 5.519 18 C 0.166 3.834 19 C -0.021 4.021 20 H 0.090 0.910 21 H 0.106 0.894 22 H 0.102 0.898 23 H 0.207 0.793 24 H -0.013 1.013 25 H 0.015 0.985 26 H 0.264 0.736 27 H 0.214 0.786 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.908 -7.560 0.938 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.144 5.144 3 C -0.050 4.050 4 C -0.172 4.172 5 C 0.061 3.939 6 C -0.555 4.555 7 H 0.062 0.938 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.195 1.195 12 H -0.194 1.194 13 H -0.206 1.206 14 C -0.051 4.051 15 N -0.230 5.230 16 C -0.046 4.046 17 N -0.233 5.233 18 C -0.010 4.010 19 C -0.134 4.134 20 H 0.109 0.891 21 H 0.124 0.876 22 H 0.121 0.879 23 H 0.224 0.776 24 H 0.005 0.995 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.230 0.770 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.310 -8.022 0.978 17.312 hybrid contribution 0.435 0.925 -0.660 1.217 sum -14.875 -7.097 0.318 16.484 Atomic orbital electron populations 1.22438 0.72962 1.06518 1.05010 1.43818 1.07769 1.02224 1.60550 1.22134 0.88516 0.92723 1.01593 1.20851 0.96203 0.90385 1.09792 1.17306 0.89456 0.91486 0.95686 1.21353 1.14373 1.26817 0.92999 0.93826 1.25871 0.96460 0.95481 1.01527 1.70084 1.22563 1.31470 1.33035 0.85438 0.78002 0.78242 0.79566 1.19510 1.19418 1.20603 1.20550 0.88987 0.94596 1.01004 1.67818 1.38428 1.03227 1.13535 1.25065 0.93796 0.89817 0.95968 1.68377 1.00450 1.38755 1.15756 1.22823 1.00423 0.84459 0.93287 1.20044 0.92259 0.92134 1.08966 0.89125 0.87577 0.87911 0.77592 0.99457 0.96642 0.92666 0.76989 0.77460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 11.05 127.77 1.41 2.32 15 2 N -0.46 -12.57 3.17 -539.21 -1.71 -14.28 15 3 C 0.08 2.73 11.20 83.13 0.93 3.66 15 4 C -0.17 -7.67 5.49 -18.71 -0.10 -7.77 15 5 C 0.10 5.55 5.50 29.10 0.16 5.71 15 6 C -0.52 -31.13 9.09 25.60 0.23 -30.90 15 7 H 0.04 2.64 7.74 -2.91 -0.02 2.61 15 8 C 0.00 0.25 5.46 84.66 0.46 0.71 15 9 N -0.93 -57.98 13.29 21.45 0.28 -57.70 15 10 Si 0.96 46.22 29.54 68.60 2.03 48.25 15 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 15 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 15 14 C 0.09 3.94 7.55 41.63 0.31 4.25 15 15 N -0.52 -23.68 10.50 -190.00 -2.00 -25.67 15 16 C 0.24 8.79 12.26 180.86 2.22 11.01 15 17 N -0.52 -16.49 10.41 -199.75 -2.08 -18.57 15 18 C 0.17 4.56 11.31 84.79 0.96 5.52 15 19 C -0.02 -0.70 6.84 39.13 0.27 -0.43 15 20 H 0.09 0.87 8.14 -2.39 -0.02 0.85 15 21 H 0.11 1.01 8.14 -2.38 -0.02 0.99 15 22 H 0.10 0.90 8.14 -2.39 -0.02 0.88 15 23 H 0.21 5.52 8.06 -2.91 -0.02 5.49 15 24 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 15 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 26 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 27 H 0.21 6.13 8.06 -2.91 -0.02 6.11 15 28 H 0.21 3.33 8.06 -2.91 -0.02 3.30 15 Total: -1.00 -79.58 254.90 4.54 -75.03 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: 1.16 Total: -1.16 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.85 Total: -5.91 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -5.50 Total: -116.21 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -79.58 4.54 -75.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.342 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds