Wall clock time and date at job start Mon Mar 30 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00107 * 2 1 4 4 H 1.48494 * 109.47552 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46835 * 300.00088 * 3 2 1 6 6 H 1.48497 * 109.46972 * 59.99451 * 3 2 1 7 7 C 1.37874 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00234 * 185.87240 * 7 2 1 9 9 C 1.50700 * 120.00188 * 5.86733 * 7 2 1 10 10 H 1.08998 * 109.24350 * 335.06464 * 9 7 2 11 11 C 1.52725 * 109.21666 * 94.50149 * 9 7 2 12 12 C 1.53334 * 108.39572 * 171.33303 * 11 9 7 13 13 C 1.52741 * 108.36356 * 290.17291 * 12 11 9 14 14 C 1.50629 * 110.58183 * 51.11688 * 13 12 11 15 15 C 1.39569 * 117.75343 * 162.50538 * 14 13 12 16 16 N 1.39675 * 119.80945 * 359.45731 * 15 14 13 17 17 C 1.38618 * 120.38309 * 179.43743 * 15 14 13 18 18 C 1.38126 * 119.68924 * 0.02562 * 17 15 14 19 19 C 1.37981 * 119.85258 * 0.13145 * 18 17 15 20 20 C 1.37533 * 122.59939 * 342.17013 * 14 13 12 21 21 H 0.96999 * 120.00592 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.68439 * 291.05914 * 11 9 7 23 23 H 1.08997 * 109.68208 * 51.60980 * 11 9 7 24 24 H 1.08996 * 109.68462 * 170.45419 * 12 11 9 25 25 H 1.08999 * 109.71664 * 49.90666 * 12 11 9 26 26 H 1.08995 * 109.25498 * 290.83579 * 13 12 11 27 27 H 1.08999 * 109.25024 * 171.40035 * 13 12 11 28 28 H 0.97004 * 119.99759 * 0.02562 * 16 15 14 29 29 H 0.96994 * 120.00124 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.15080 * 179.97438 * 17 15 14 31 31 H 1.07996 * 120.07626 * 180.10894 * 18 17 15 32 32 H 1.08003 * 119.64419 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0803 -1.1964 0.0962 9 6 1.2570 -2.4958 -0.1323 10 1 0.2344 -2.3604 0.2197 11 6 1.2327 -2.9139 -1.6010 12 6 0.6647 -4.3354 -1.6901 13 6 1.6889 -5.3009 -1.0968 14 6 2.1275 -4.8353 0.2669 15 6 2.7570 -5.7625 1.0988 16 7 2.9489 -7.0736 0.6572 17 6 3.1933 -5.3895 2.3606 18 6 3.0022 -4.0923 2.7948 19 6 2.3767 -3.1778 1.9724 20 6 1.9362 -3.5464 0.7069 21 1 -0.4851 0.8400 -0.0004 22 1 0.6005 -2.2299 -2.1671 23 1 2.2452 -2.8973 -2.0042 24 1 0.4794 -4.5920 -2.7331 25 1 -0.2661 -4.3955 -1.1262 26 1 2.5563 -5.3537 -1.7547 27 1 1.2419 -6.2914 -1.0120 28 1 2.6453 -7.3374 -0.2255 29 1 3.3864 -7.7201 1.2329 30 1 3.6797 -6.1102 3.0014 31 1 3.3412 -3.7945 3.7760 32 1 2.2286 -2.1645 2.3155 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:11 Heat of formation + Delta-G solvation = 1.665994 kcal Electronic energy + Delta-G solvation = -14517.241256 eV Core-core repulsion = 12248.134780 eV Total energy + Delta-G solvation = -2269.106477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31114 -35.62552 -34.11372 -32.60095 -29.76047 -29.25529 -27.04954 -24.90426 -22.22518 -21.84863 -20.34776 -18.47951 -16.67534 -16.21801 -15.82764 -14.78250 -14.47482 -13.78367 -13.76340 -12.97015 -12.72183 -12.53137 -12.34748 -11.54245 -11.51203 -11.09056 -10.91857 -10.69078 -10.61050 -10.24554 -10.05388 -9.88664 -9.51098 -8.96439 -8.90074 -8.46873 -7.58722 -6.78358 -6.00763 -4.02289 2.28704 2.49999 3.30773 3.39322 3.44403 4.34824 4.44964 4.74262 5.28605 5.46448 5.57128 5.78052 5.83384 5.98680 6.20377 6.23808 6.43918 6.47416 6.58057 6.65105 6.70054 6.87967 7.12056 7.13391 7.17042 7.42596 7.51894 7.72886 7.80007 7.92654 7.98168 8.16650 8.20313 8.46720 9.06337 9.59761 11.07829 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.009938 C = 0.008292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.704255 B = 2816.831448 C = 3376.010665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.060 3.940 10 H 0.075 0.925 11 C -0.100 4.100 12 C -0.121 4.121 13 C -0.061 4.061 14 C -0.169 4.169 15 C 0.200 3.800 16 N -0.888 5.888 17 C -0.225 4.225 18 C -0.092 4.092 19 C -0.153 4.153 20 C 0.011 3.989 21 H 0.261 0.739 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.392 0.608 29 H 0.389 0.611 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -10.260 0.445 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.042 3.958 10 H 0.093 0.907 11 C -0.138 4.138 12 C -0.158 4.158 13 C -0.098 4.098 14 C -0.174 4.174 15 C 0.098 3.902 16 N -0.429 5.429 17 C -0.248 4.248 18 C -0.110 4.110 19 C -0.173 4.173 20 C 0.010 3.990 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.220 0.780 29 H 0.215 0.785 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.278 -10.068 0.463 10.598 hybrid contribution 0.591 0.534 -0.028 0.797 sum 3.868 -9.534 0.436 10.298 Atomic orbital electron populations 1.69915 1.05910 1.26544 1.50794 1.24972 0.94818 0.99132 0.94868 0.86584 0.80324 0.83876 0.77559 1.19676 1.21024 1.21071 1.21067 0.93342 0.89801 1.49748 0.92521 1.18008 0.97931 0.90424 0.89478 0.90686 1.21639 0.99154 0.92829 1.00190 1.21622 0.98171 0.97301 0.98747 1.20139 0.98376 0.97745 0.93561 1.19145 1.07699 0.93843 0.96680 1.17730 0.94947 0.84588 0.92941 1.42444 1.70330 1.09421 1.20707 1.20199 1.11095 0.97468 0.96032 1.20755 0.98582 0.92981 0.98726 1.21163 1.01678 0.99853 0.94610 1.20299 0.92123 0.92348 0.94209 0.92944 0.92590 0.93617 0.93377 0.92400 0.92410 0.93110 0.77973 0.78452 0.87820 0.87450 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 12.76 55.43 0.71 -24.83 16 2 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.50 -13.58 6.87 -34.44 -0.24 -13.82 16 8 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 9 C 0.06 1.49 2.33 -93.09 -0.22 1.27 16 10 H 0.08 2.09 7.22 -51.93 -0.37 1.72 16 11 C -0.10 -2.24 5.23 -26.70 -0.14 -2.38 16 12 C -0.12 -2.24 5.98 -26.69 -0.16 -2.40 16 13 C -0.06 -1.05 4.88 -28.05 -0.14 -1.19 16 14 C -0.17 -3.37 5.75 -104.42 -0.60 -3.97 16 15 C 0.20 3.53 6.72 -83.65 -0.56 2.97 16 16 N -0.89 -11.81 8.95 32.48 0.29 -11.52 16 17 C -0.23 -3.94 9.88 -39.48 -0.39 -4.33 16 18 C -0.09 -1.72 10.04 -39.72 -0.40 -2.12 16 19 C -0.15 -3.37 9.04 -39.40 -0.36 -3.73 16 20 C 0.01 0.25 5.42 -104.64 -0.57 -0.32 16 21 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 22 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 23 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.75 6.99 -51.93 -0.36 0.39 16 28 H 0.39 4.66 6.86 -40.82 -0.28 4.38 16 29 H 0.39 4.20 8.83 -40.82 -0.36 3.84 16 30 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 2.90 7.26 -52.48 -0.38 2.52 16 LS Contribution 260.17 15.07 3.92 3.92 Total: -1.00 -28.90 260.17 -8.22 -37.12 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.26 Total: 7.47 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -3.86 Total: -28.36 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 1.00 Total: -36.35 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.90 -8.22 -37.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.785 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds