Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00107 * 2 1 4 4 H 1.48494 * 109.47552 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46835 * 300.00088 * 3 2 1 6 6 H 1.48497 * 109.46972 * 59.99451 * 3 2 1 7 7 C 1.37874 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00234 * 185.87240 * 7 2 1 9 9 C 1.50700 * 120.00188 * 5.86733 * 7 2 1 10 10 H 1.08998 * 109.24350 * 335.06464 * 9 7 2 11 11 C 1.52725 * 109.21666 * 94.50149 * 9 7 2 12 12 C 1.53334 * 108.39572 * 171.33303 * 11 9 7 13 13 C 1.52741 * 108.36356 * 290.17291 * 12 11 9 14 14 C 1.50629 * 110.58183 * 51.11688 * 13 12 11 15 15 C 1.39569 * 117.75343 * 162.50538 * 14 13 12 16 16 N 1.39675 * 119.80945 * 359.45731 * 15 14 13 17 17 C 1.38618 * 120.38309 * 179.43743 * 15 14 13 18 18 C 1.38126 * 119.68924 * 0.02562 * 17 15 14 19 19 C 1.37981 * 119.85258 * 0.13145 * 18 17 15 20 20 C 1.37533 * 122.59939 * 342.17013 * 14 13 12 21 21 H 0.96999 * 120.00592 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.68439 * 291.05914 * 11 9 7 23 23 H 1.08997 * 109.68208 * 51.60980 * 11 9 7 24 24 H 1.08996 * 109.68462 * 170.45419 * 12 11 9 25 25 H 1.08999 * 109.71664 * 49.90666 * 12 11 9 26 26 H 1.08995 * 109.25498 * 290.83579 * 13 12 11 27 27 H 1.08999 * 109.25024 * 171.40035 * 13 12 11 28 28 H 0.97004 * 119.99759 * 0.02562 * 16 15 14 29 29 H 0.96994 * 120.00124 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.15080 * 179.97438 * 17 15 14 31 31 H 1.07996 * 120.07626 * 180.10894 * 18 17 15 32 32 H 1.08003 * 119.64419 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0803 -1.1964 0.0962 9 6 1.2570 -2.4958 -0.1323 10 1 0.2344 -2.3604 0.2197 11 6 1.2327 -2.9139 -1.6010 12 6 0.6647 -4.3354 -1.6901 13 6 1.6889 -5.3009 -1.0968 14 6 2.1275 -4.8353 0.2669 15 6 2.7570 -5.7625 1.0988 16 7 2.9489 -7.0736 0.6572 17 6 3.1933 -5.3895 2.3606 18 6 3.0022 -4.0923 2.7948 19 6 2.3767 -3.1778 1.9724 20 6 1.9362 -3.5464 0.7069 21 1 -0.4851 0.8400 -0.0004 22 1 0.6005 -2.2299 -2.1671 23 1 2.2452 -2.8973 -2.0042 24 1 0.4794 -4.5920 -2.7331 25 1 -0.2661 -4.3955 -1.1262 26 1 2.5563 -5.3537 -1.7547 27 1 1.2419 -6.2914 -1.0120 28 1 2.6453 -7.3374 -0.2255 29 1 3.3864 -7.7201 1.2329 30 1 3.6797 -6.1102 3.0014 31 1 3.3412 -3.7945 3.7760 32 1 2.2286 -2.1645 2.3155 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = -15.434802 kcal Electronic energy + Delta-G solvation = -14517.982802 eV Core-core repulsion = 12248.134780 eV Total energy + Delta-G solvation = -2269.848023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82750 -37.23213 -35.55438 -34.50249 -31.45244 -30.81406 -28.52211 -26.84673 -23.88687 -23.41683 -21.92560 -20.07305 -18.47114 -17.81849 -17.26817 -16.38287 -16.28031 -15.28986 -15.27341 -14.48976 -14.37209 -14.31001 -13.96660 -13.24004 -13.09710 -12.84497 -12.65042 -12.44593 -12.24903 -11.93226 -11.87309 -11.49686 -11.13013 -10.77461 -10.73511 -10.50975 -9.18513 -8.16788 -8.08300 -6.19044 0.77591 0.97220 1.38325 1.40343 1.52362 2.43074 3.15312 3.18855 3.24063 4.03876 4.10207 4.30223 4.41169 4.56930 4.66026 4.79328 4.85114 4.98251 5.01084 5.17052 5.21302 5.23604 5.43115 5.49858 5.62724 5.67088 5.76394 5.84730 5.95556 6.25466 6.26869 6.47100 6.80498 6.96015 7.19442 7.45091 8.96915 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.009938 C = 0.008292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.704255 B = 2816.831448 C = 3376.010665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.508 4.508 8 H 0.045 0.955 9 C 0.060 3.940 10 H 0.031 0.969 11 C -0.095 4.095 12 C -0.114 4.114 13 C -0.057 4.057 14 C -0.184 4.184 15 C 0.209 3.791 16 N -0.867 5.867 17 C -0.221 4.221 18 C -0.088 4.088 19 C -0.188 4.188 20 C -0.021 4.021 21 H 0.261 0.739 22 H 0.030 0.970 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.402 0.598 29 H 0.406 0.594 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 -12.836 0.403 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.041 3.959 10 H 0.049 0.951 11 C -0.133 4.133 12 C -0.151 4.151 13 C -0.094 4.094 14 C -0.188 4.188 15 C 0.104 3.896 16 N -0.409 5.409 17 C -0.244 4.244 18 C -0.106 4.106 19 C -0.208 4.208 20 C -0.022 4.022 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.233 0.767 29 H 0.236 0.764 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.787 -12.691 0.411 13.570 hybrid contribution 0.163 1.216 0.037 1.227 sum 4.950 -11.475 0.448 12.505 Atomic orbital electron populations 1.70044 1.07258 1.27225 1.52223 1.25710 0.95599 1.02360 0.94877 0.85611 0.79105 0.79928 0.77707 1.19281 1.20376 1.20616 1.21289 0.92867 0.91421 1.49027 0.93702 1.17849 0.95577 0.90980 0.91475 0.95069 1.21470 0.98699 0.95208 0.97941 1.21543 0.97955 0.94928 1.00688 1.20178 0.98486 0.98554 0.92167 1.19368 1.08020 0.93077 0.98363 1.17774 0.93431 0.85837 0.92579 1.42351 1.69281 1.07823 1.21454 1.20596 1.10064 0.97324 0.96372 1.20985 0.97281 0.93159 0.99186 1.21034 1.04647 0.99456 0.95688 1.20130 0.94135 0.93402 0.94498 0.92947 0.95085 0.93864 0.90343 0.93503 0.90969 0.89774 0.76729 0.76449 0.84105 0.85005 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 12.76 21.45 0.27 -55.46 16 2 C 0.01 0.71 5.45 84.66 0.46 1.17 16 3 Si 0.95 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.51 -28.97 6.87 25.60 0.18 -28.79 16 8 H 0.04 2.59 7.82 -2.91 -0.02 2.57 16 9 C 0.06 3.14 2.33 -12.40 -0.03 3.11 16 10 H 0.03 1.88 7.22 -2.39 -0.02 1.87 16 11 C -0.10 -4.38 5.23 30.61 0.16 -4.22 16 12 C -0.11 -4.10 5.98 30.62 0.18 -3.92 16 13 C -0.06 -1.80 4.88 29.74 0.14 -1.65 16 14 C -0.18 -7.01 5.75 -19.73 -0.11 -7.12 16 15 C 0.21 6.63 6.72 38.30 0.26 6.89 16 16 N -0.87 -18.68 8.95 -51.14 -0.46 -19.13 16 17 C -0.22 -6.94 9.88 22.33 0.22 -6.72 16 18 C -0.09 -3.18 10.04 22.18 0.22 -2.96 16 19 C -0.19 -8.56 9.04 22.39 0.20 -8.35 16 20 C -0.02 -0.97 5.42 -19.87 -0.11 -1.08 16 21 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 22 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.96 8.08 -2.39 -0.02 1.94 16 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.11 6.99 -2.39 -0.02 2.09 16 28 H 0.40 7.40 6.86 -92.71 -0.64 6.77 16 29 H 0.41 6.48 8.83 -92.71 -0.82 5.66 16 30 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.09 4.66 7.26 -2.91 -0.02 4.63 16 Total: -1.00 -65.94 260.17 3.30 -62.65 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.33 Total: 18.53 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 1.78 Total: -53.65 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -0.18 Total: -74.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.94 3.30 -62.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.213 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds