Wall clock time and date at job start Mon Mar 30 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99381 * 2 1 4 4 H 1.48501 * 109.47189 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46623 * 120.00062 * 3 2 1 7 7 C 1.37873 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99875 * 185.12163 * 7 2 1 9 9 C 1.50704 * 119.99675 * 5.12710 * 7 2 1 10 10 H 1.08995 * 109.25129 * 24.33740 * 9 7 2 11 11 C 1.52735 * 109.24937 * 264.87178 * 9 7 2 12 12 C 1.53328 * 108.37543 * 188.61679 * 11 9 7 13 13 C 1.52736 * 108.37213 * 69.84857 * 12 11 9 14 14 C 1.50627 * 110.59421 * 308.95083 * 13 12 11 15 15 C 1.39580 * 117.75442 * 197.45833 * 14 13 12 16 16 N 1.39676 * 119.80329 * 0.27231 * 15 14 13 17 17 C 1.38605 * 120.39024 * 180.25772 * 15 14 13 18 18 C 1.38138 * 119.68580 * 0.10235 * 17 15 14 19 19 C 1.37977 * 119.85087 * 0.16310 * 18 17 15 20 20 C 1.37528 * 122.60788 * 17.67715 * 14 13 12 21 21 H 0.96997 * 120.00538 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.68160 * 68.89147 * 11 9 7 23 23 H 1.09004 * 109.71248 * 308.35286 * 11 9 7 24 24 H 1.09003 * 109.67813 * 310.13158 * 12 11 9 25 25 H 1.08997 * 109.68599 * 189.57214 * 12 11 9 26 26 H 1.09004 * 109.25004 * 188.66379 * 13 12 11 27 27 H 1.08995 * 109.21962 * 69.21665 * 13 12 11 28 28 H 0.97001 * 119.99525 * 179.97438 * 16 15 14 29 29 H 0.97002 * 120.00239 * 359.97438 * 16 15 14 30 30 H 1.07996 * 120.15931 * 180.08588 * 17 15 14 31 31 H 1.07999 * 120.07487 * 179.89153 * 18 17 15 32 32 H 1.08010 * 119.64412 * 179.67210 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1957 0.0830 9 6 1.2557 -2.4965 -0.1178 10 1 0.2996 -2.3182 -0.6097 11 6 1.0057 -3.0610 1.2792 12 6 0.4407 -4.4790 1.1335 13 6 1.5514 -5.3886 0.6125 14 6 2.1959 -4.7907 -0.6106 15 6 2.9549 -5.6341 -1.4235 16 7 3.0886 -6.9839 -1.0902 17 6 3.5765 -5.1401 -2.5596 18 6 3.4442 -3.8044 -2.8859 19 6 2.6980 -2.9708 -2.0783 20 6 2.0655 -3.4625 -0.9427 21 1 -0.4851 0.8400 0.0004 22 1 0.2882 -2.4322 1.8063 23 1 1.9426 -3.0945 1.8353 24 1 -0.3899 -4.4724 0.4277 25 1 0.0963 -4.8384 2.1032 26 1 1.1297 -6.3609 0.3575 27 1 2.3049 -5.5162 1.3896 28 1 3.6151 -7.5726 -1.6534 29 1 2.6549 -7.3326 -0.2957 30 1 4.1618 -5.7963 -3.1867 31 1 3.9273 -3.4124 -3.7687 32 1 2.6011 -1.9258 -2.3337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293211.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:14 Heat of formation + Delta-G solvation = 1.522285 kcal Electronic energy + Delta-G solvation = -14520.303644 eV Core-core repulsion = 12251.190935 eV Total energy + Delta-G solvation = -2269.112708 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31418 -35.62007 -34.11637 -32.59696 -29.76097 -29.24658 -27.05047 -24.90538 -22.22175 -21.83955 -20.34591 -18.46958 -16.67809 -16.21660 -15.83196 -14.78375 -14.47669 -13.77874 -13.76529 -12.97216 -12.71981 -12.53695 -12.33976 -11.53594 -11.46496 -11.12457 -10.86067 -10.69251 -10.64083 -10.25158 -10.03547 -9.88843 -9.50193 -9.00225 -8.95364 -8.38212 -7.59536 -6.79058 -6.00355 -4.02596 2.27948 2.49140 3.33908 3.38497 3.41884 4.34446 4.45061 4.73519 5.29134 5.46686 5.57237 5.78679 5.83797 5.98793 6.20455 6.23872 6.44024 6.48294 6.59239 6.64862 6.70772 6.89893 7.12278 7.13425 7.19125 7.43273 7.52983 7.72858 7.77909 7.93778 7.98295 8.16138 8.19970 8.46719 9.05314 9.59907 11.08268 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034657 B = 0.010075 C = 0.008269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.717016 B = 2778.424887 C = 3385.279634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.056 0.944 9 C 0.063 3.937 10 H 0.071 0.929 11 C -0.099 4.099 12 C -0.121 4.121 13 C -0.061 4.061 14 C -0.169 4.169 15 C 0.200 3.800 16 N -0.888 5.888 17 C -0.225 4.225 18 C -0.092 4.092 19 C -0.154 4.154 20 C 0.010 3.990 21 H 0.262 0.738 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.389 0.611 29 H 0.392 0.608 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -10.144 -1.425 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.045 3.955 10 H 0.089 0.911 11 C -0.137 4.137 12 C -0.159 4.159 13 C -0.098 4.098 14 C -0.173 4.173 15 C 0.098 3.902 16 N -0.429 5.429 17 C -0.248 4.248 18 C -0.111 4.111 19 C -0.174 4.174 20 C 0.009 3.991 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.216 0.784 29 H 0.220 0.780 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.394 -9.946 -1.436 10.607 hybrid contribution 0.616 0.522 0.005 0.808 sum 4.010 -9.424 -1.431 10.341 Atomic orbital electron populations 1.69918 1.05912 1.26771 1.50485 1.24974 0.94826 0.99084 0.94921 0.86691 0.79638 0.83181 0.78729 1.20150 1.21366 1.20289 1.20991 0.93181 0.89824 1.50118 0.92613 1.17964 0.96137 0.90933 0.90442 0.91091 1.21618 0.99240 0.92620 1.00233 1.21628 0.97383 0.97575 0.99284 1.20143 0.97401 0.97429 0.94872 1.19149 1.05188 0.93845 0.99085 1.17735 0.94809 0.84019 0.93640 1.42446 1.60938 1.07481 1.32026 1.20199 1.08616 0.96488 0.99470 1.20758 0.98513 0.93058 0.98726 1.21161 1.00087 1.00181 0.95952 1.20327 0.93104 0.91899 0.93774 0.92850 0.92307 0.93734 0.92439 0.93389 0.93119 0.92408 0.78448 0.77960 0.87809 0.87449 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 12.82 55.43 0.71 -24.80 16 2 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -13.63 6.86 -34.44 -0.24 -13.87 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.06 1.58 2.26 -93.08 -0.21 1.37 16 10 H 0.07 1.98 7.35 -51.93 -0.38 1.59 16 11 C -0.10 -2.24 5.24 -26.70 -0.14 -2.38 16 12 C -0.12 -2.26 5.98 -26.70 -0.16 -2.42 16 13 C -0.06 -1.06 4.87 -28.05 -0.14 -1.19 16 14 C -0.17 -3.35 5.75 -104.42 -0.60 -3.95 16 15 C 0.20 3.53 6.72 -83.65 -0.56 2.97 16 16 N -0.89 -11.80 8.95 32.48 0.29 -11.51 16 17 C -0.22 -3.92 9.88 -39.48 -0.39 -4.31 16 18 C -0.09 -1.72 10.04 -39.71 -0.40 -2.12 16 19 C -0.15 -3.37 9.04 -39.40 -0.36 -3.73 16 20 C 0.01 0.22 5.42 -104.63 -0.57 -0.35 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 23 H 0.04 1.00 8.08 -51.93 -0.42 0.58 16 24 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.75 7.00 -51.93 -0.36 0.39 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.39 4.19 8.83 -40.82 -0.36 3.83 16 29 H 0.39 4.66 6.86 -40.82 -0.28 4.38 16 30 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.12 2.87 7.25 -52.48 -0.38 2.49 16 LS Contribution 260.30 15.07 3.92 3.92 Total: -1.00 -28.82 260.30 -8.22 -37.03 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.27 Total: 7.46 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -3.86 Total: -28.33 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 1.00 Total: -36.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.82 -8.22 -37.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293211.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.556 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds